Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1792g0001 ATGTCTCTCACGGACATGGACTTGTTCAAAAATTCAGTGCCTGAAAGCTGCACCGGCATGGACATGATTTCGATGATGATGCAGATGGAGAAGTTTCCAGCTGATCGGTTCTGCTATCCTTTCTTCAACACTCCCACTGAGAACCCTGAAGCTGAGACTGCTAATATTGCTGCCACTACTCTCCCCACATCCCTCAACCCTAACGAGGCTCCTGATTTTGTCAACGGTCCAGTTATTCAGCAATCCGTGGCACCGCCAGTCTTTCTTCAGGCTCACTCTGACGAAGTTCACGCCACGAGAGTCAGAAATAAATATAACCCCAATACATCGCATGCCTTCCCCCGCGCTTCGGACAAGAGGAATTCAATGGCGGCCATGAGAGAAATGATATTCAGGATAGCGGTGATGCAGCCCATTCATATAGACCCGGAGTCGGTGAAGCCGCCGAAGCGAAGGAATGTGAAGATTTCAAAGGACCCTCAGAGCGTGGCGGCAAGGCACAGGAGGGAGAGGATAAGCGAGAGAATAAGAATTCTGCAGAGATTAGTTCCCGGCGGGACGAAAATGGACACGGCTTCCATGTTAGACGAAGCTATACATTACGTCAAGTTCTTAAAGAAACAAGTACAGACTCTGGAACAAACTGGGGCTAGTAGGCCCGTGGGTGTTCCTTTCACTGGCGCCTCAAGTACTGCCGATGTCAATTATTCTGATTTCATCAAGGGATGTCAACCAGCTTCTCGAATGGTAGGTTCTATGCAGATACTCAGTAGAAATGAACAGTGA 786 0.4873 MSLTDMDLFKNSVPESCTGMDMISMMMQMEKFPADRFCYPFFNTPTENPEAETANIAATTLPTSLNPNEAPDFVNGPVIQQSVAPPVFLQAHSDEVHATRVRNKYNPNTSHAFPRASDKRNSMAAMREMIFRIAVMQPIHIDPESVKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQTGASRPVGVPFTGASSTADVNYSDFIKGCQPASRMVGSMQILSRNEQ 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1792g0001 261 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Prci1792g0001 261 SMART finulus 162 211 IPR011598 GO:0046983
Prci1792g0001 261 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 72 227 IPR045843 GO:0003700|GO:0006355
Prci1792g0001 261 Gene3D - 155 219 IPR036638 GO:0046983
Prci1792g0001 261 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 216 IPR036638 GO:0046983
Prci1792g0001 261 CDD bHLH_AtIND_like 157 213 - -
Prci1792g0001 261 FunFam BHLH transcription factor 159 221 - -
Prci1792g0001 261 Coils Coil 195 215 - -
Prci1792g0001 261 Pfam Helix-loop-helix DNA-binding domain 166 205 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1792g0001 97 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 70.000 3.93e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1792g0001 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1792g0001 - - qsa:O6P43_033826 248.054