Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci177g0006 ATGATGAACCATCAAGGAGGAATGAGTCACTTGAATTGTAATGCTAACAACCAAAGCAAGGTCAATCATCAGCTCATTCAAGCATCGGAATTGATACCTACTGCAAGTTCCTTTACTGCAGGTGATCATAGGTTCCCTGATCAGGTTTCGCGGTCAAATCATGCCGGTTATAATGAGAGTTTAAATAATTTTCCAAATAATGATCGCAGTGCTGCTGCTTTTCCTCATGAATCATCTGAAGTGTTGAGGTTTTCTCCTTTAACTTCCCTATCTGGAAATGTTAGAAGGTTCCCAGATGGGCTTTCTGGATCAAGTGACCTCCACTCTCAAGCAAGTAATAGTATTATTCCAAGCATTGGTCACAGTGCTGTTGTTGTTCCTCAAAATGTTGACTCAGGTGCAGAATATGCTGGGAACAATTATTATAACGATTTGAATTTGTCACTAAGTCTCGGCCCTCATTCATCTGAACAAGAAAATCAGAATACCAGCAGCTCTTGCACAACTGTAATTGATCTTGGAAGATCAAGTTCTGCAGTGCAAGAGCAAGGTTTGGATAGCAGCTCAGTTAATATGAGGCGTTTATCCTGCAAGAGAAAGTCTTCTGAACATGCTATCAGAGAATTGTTAGTAGGTGAGAGTTCTAGCTCAGCTGCACAAACTGGATTTTCCAAGCGGTGGGCTTCTGAAGTCCATGGCAATAATGGGCTAAACATATGTACTCCTTGTACTAGCCCTGTTAGTCATCAAGAACGGTCTGAGACCATTATTGGTCATAGTCCTATAGGGCCAGTTTCTGACGTTCAGCATTTGAATGGAGCTAGACTATCTGAAAACTTCCGAAGTAACATTCATCTTCATACAACTGCAAGTCAACAAACTTTTCTACCAACCAGCATTTTGTCATCAGGTTACAGGAGGGATACTCATATCCAGTTACCCAGTCAGTCACCTTTGTATGGCCAAGTCAACCATCCTCCATTCTTCAGATCTGCAGAAAGTTCTATTAATCCACTTTTCTCAGTGCAGCCTGATGGGCATGTTCCTATTTTTCATGAAACTCCACAGGCTACCCCCTGGATTAACATGATGAGACCAAGTAGTGTTTTTTCTTCATTTTTGCCTGTCAATGCTACAGTGGAAAGTGATGCTGTGGCACCCTTTCATTACCCAAGACACATAACTGAAAACATTATGCTTAGCCGCCAAATTGGAGTGAGAAATTGGGTACATGATGCAAGAAACTCACATTTTGTTAATGGAGCTGCCAACTTCCATGGAGATTTTTTCTGCCCTCTTCATGGTTGTGTTTCTGGTATAATTCATTCAGAAAATGCCCCTACTTGGTTCTCAGGGTTCAGTTTTGCTGATCGTTACATGCAGACACCATCAAGAATTGTGAATCACCCTGTGCTTGCAACTACTGGTTTCCCTTGGCTCAGTCACAGCCCAGCAGATTCAGATCTTTCAGCTGTCTTACAGGAACTGCGCTTTGCTGTTGGATTTGTTAATACCGTATCTCAGAATCAGCATGCATCAGGAGCAAGATCTGAGAATCATGCTGCTTTTAATTTTACATGGTCACTTGCTAATGCTCGAAATAGAATGAGGCTGAGGCCTGAGAATCTGCATGCATCAGAAGCAAGACCCGAGAATCAAGATGATAGCTATTATGATCACCTTTATCATTCGTTTTGGTCGCCAGCTAATGCTGCAAACAGAAGGAGGCTGAGTATTGAGCTTCACCATAGGCTGGCACATATGCGCAGTGAAGACCCCTTGCAGCCTGTGATGATTCCACTGGAATTGAGGATGTTGGACCATTCAATTATAATGGATATCCTTCAGGAGCATGCCAATGTAGATGGGCTGCATTTTGATTTAGACGACTGGACAAATGAGCTTCAGGATCTTGCGGCCCTAGCAGAGCCTATTGAGGCGGGCCTGAGTGAGGAAATGATTCTCAGCCACCTTAGGCAGGAAAAATTCCATCTCATCCCAGCTGGGTCTGAGGAAAGCGAATGCTGCTGCATATGTCAGGAGGAGTACCGTGAAAATGAAGATCTGGGCAAGCTGTGCTGTGCCCACAGATTTCATGTAGACTGTATCAAGCCATGGCTCGAGCTGAAGAACATCTGCCCCATTTGCAAACAAGTCGCACTTCCTCTTTTTCTTGATTCTCCTTAA 2187 0.4326 MMNHQGGMSHLNCNANNQSKVNHQLIQASELIPTASSFTAGDHRFPDQVSRSNHAGYNESLNNFPNNDRSAAAFPHESSEVLRFSPLTSLSGNVRRFPDGLSGSSDLHSQASNSIIPSIGHSAVVVPQNVDSGAEYAGNNYYNDLNLSLSLGPHSSEQENQNTSSSCTTVIDLGRSSSAVQEQGLDSSSVNMRRLSCKRKSSEHAIRELLVGESSSSAAQTGFSKRWASEVHGNNGLNICTPCTSPVSHQERSETIIGHSPIGPVSDVQHLNGARLSENFRSNIHLHTTASQQTFLPTSILSSGYRRDTHIQLPSQSPLYGQVNHPPFFRSAESSINPLFSVQPDGHVPIFHETPQATPWINMMRPSSVFSSFLPVNATVESDAVAPFHYPRHITENIMLSRQIGVRNWVHDARNSHFVNGAANFHGDFFCPLHGCVSGIIHSENAPTWFSGFSFADRYMQTPSRIVNHPVLATTGFPWLSHSPADSDLSAVLQELRFAVGFVNTVSQNQHASGARSENHAAFNFTWSLANARNRMRLRPENLHASEARPENQDDSYYDHLYHSFWSPANAANRRRLSIELHHRLAHMRSEDPLQPVMIPLELRMLDHSIIMDILQEHANVDGLHFDLDDWTNELQDLAALAEPIEAGLSEEMILSHLRQEKFHLIPAGSEESECCCICQEEYRENEDLGKLCCAHRFHVDCIKPWLELKNICPICKQVALPLFLDSP 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci177g0006 728 ProSiteProfiles Zinc finger RING-type profile. 676 717 IPR001841 -
Prci177g0006 728 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 166 721 IPR045191 GO:0061630
Prci177g0006 728 SUPERFAMILY RING/U-box 671 721 - -
Prci177g0006 728 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 721 IPR013083 -
Prci177g0006 728 SMART ring_2 676 716 IPR001841 -
Prci177g0006 728 Pfam Ring finger domain 676 717 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci177g0006 560 721 C3H Transcription Factor Family AT2G15530 39.766 5.25e-22 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci177g0006 - - pcin:129295749 1484.54