Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci177g0003 ATGGGGGATATGTACGGCTATGGAAAGAGTAACGTTATTCCCTCTTCTTCGTCTTCAACCTCACCTCCAGACGAATTTTCCCTTTTTCTGCATCAGATTCTCCTCCCTCCTCCCTCCTCCTCCGACGCACCGCCACTGTCTTCCCTCCTCACCCACGTGCCTGAAAACGCACCCAACGCTTCCGAGCATCAAAATGCCAGCCTTTCATACCCATCTTCTCTTCTTCAAGATGTAATCTCAGGCGTTGATTCTGCCTCTAAAAACCGTGCCTTTCTCTCATCTTACGTGAAGGGGGGTTCTGCTGCAAATGTGTCGTCCTCCTCGGTCGGAGTAAGCGAGAATGAGACTGATGAGTATGATTATGACAGTGAGGAGGGTACGGTTGAAGCAATGGTTCCAAAGTCAGTTCCTCCTAGGCGTTCATCGAAGAGAAGCAGAGCTGCAGAAGTTCATAACTTGTCTGAGAAGCGAAGGAGGAGTCGGATCAACGAAAAGCTGAAGGCTTTGCAGAATCTAATTCCAAATTCAAATAAGACTGACAAGGCGTCGATGCTTGATGAAGCTATTGAGTATCTTAAACAGCTTCAGCTTCAAGTACAGATGCTGTCTGTAAGAAACGGATTGAATTTGCTTCCTACGTGCTTCGCTGAAGGCTTGCAGCCTCTGCAACTGTCTCAGATGAGAGTTGAGTATGGCGAAGAAGAAGACGGGTCGTGTCCTTTAAACTTAACTACTACTATGCCTCTTGACAATGAATCCAATCTATCTAACAAACGCACTGTGCCCTCTCATTTAAATATAATCAATTCAGAAACACCTTTTGGGTTGGATTCTCAAATCATAGGGCACCTTAGACCCTTTGAACTCAAAGCATCATCTTCTGAGATATGCAGGGAGGACTTATATCAGCACAAACAATTAAATGCAGAAGATTCAAATACCAATCCTATGGGTGATTCTCAGACTGTACGAGAATTTGAGTCAGGTACGTTGGCTTCAGTATCACTCGCCTTTGATAAGCAAAACGACCGGAGTGAAGAATTGAAAACATGCATTGCGGGAAGAGATTAG 1071 0.451 MGDMYGYGKSNVIPSSSSSTSPPDEFSLFLHQILLPPPSSSDAPPLSSLLTHVPENAPNASEHQNASLSYPSSLLQDVISGVDSASKNRAFLSSYVKGGSAANVSSSSVGVSENETDEYDYDSEEGTVEAMVPKSVPPRRSSKRSRAAEVHNLSEKRRRSRINEKLKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSVRNGLNLLPTCFAEGLQPLQLSQMRVEYGEEEDGSCPLNLTTTMPLDNESNLSNKRTVPSHLNIINSETPFGLDSQIIGHLRPFELKASSSEICREDLYQHKQLNAEDSNTNPMGDSQTVREFESGTLASVSLAFDKQNDRSEELKTCIAGRD 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci177g0003 356 FunFam Basic helix-loop-helix transcription factor 141 204 - -
Prci177g0003 356 Pfam Helix-loop-helix DNA-binding domain 150 196 IPR011598 GO:0046983
Prci177g0003 356 SMART finulus 152 201 IPR011598 GO:0046983
Prci177g0003 356 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 205 IPR036638 GO:0046983
Prci177g0003 356 MobiDBLite consensus disorder prediction 142 158 - -
Prci177g0003 356 MobiDBLite consensus disorder prediction 39 68 - -
Prci177g0003 356 MobiDBLite consensus disorder prediction 10 24 - -
Prci177g0003 356 MobiDBLite consensus disorder prediction 1 24 - -
Prci177g0003 356 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 19 317 IPR031066 -
Prci177g0003 356 Gene3D - 141 205 IPR036638 GO:0046983
Prci177g0003 356 MobiDBLite consensus disorder prediction 44 68 - -
Prci177g0003 356 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 146 195 IPR011598 GO:0046983
Prci177g0003 356 MobiDBLite consensus disorder prediction 100 158 - -
Prci177g0003 356 MobiDBLite consensus disorder prediction 100 114 - -
Prci177g0003 356 CDD bHLH_AtPIF_like 146 208 IPR047265 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci177g0003 114 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 50.235 2.09e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci177g0003 HLH 1.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci177g0003 - - pcin:129295751 634.795