Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1745g0004 ATGATTATTTACCGTTCCGCTTTGATGTTACATCTCCAAATACCATCAATTCGATCCCATGTCTTCTCCCATTTCAAGCACACATACTTCTTCCGCTTCACTTCTTCGCCTTCTTTGGTTAATGTTCCCTTCATTTCGCTTTCTCGTCCTCGCCAACGGCTGTTCAAGGCGTTCGGGAGTGCCATCGTGGCGGCCGCAAATACAAAAAGGATAGACACATTCTTGGCGGAAGAAGATGTTTCGTGGAATTCACTTCGTCTGTCTGATGCCATTTCCCGAGCTCTCTCTAGTATTGGCCTCGATAGGCCATCTCTGGTCCAGGCTTCTTCTATACCGTCTGTGCTTTCTGGAAAGGACGTGGTTATTGCAGCGGAGACTGGTAGTGGTAAAACACACAGTTATCTAGTTCCTCTAATTGATAAGCTACGAGGTTCACACTACAATTCTGCCAATGCTGTCAGTTATCAAAAAGAGCCTCTCTGTAAGATTCTGCTAGTTCTGTGTCCAAATGTACAACTCTGTGAACAAGTAGCTCAAATGGCTAACAGTATTTGTGGGGACGATGGTACGCCGATGGTTAGTGTGGCAGCCATTTGTGGAAGACAGGGATGGCCTATTCATGAACCAGATATAATTGTGACAACACCCGTTGCTCTTCTAAACTATGTTGAACAAAACAGAAACCGCCGAATGGAATTTATGCGCAGTGTTAAATATGTGGTCTTTGATGAAGCTGATATGCTTCTCTGTGGGAGTTTCCAAAATAAAGTGATTCGTCTGATAAACCTGCTTCGCTTTGATGAAAAGCTCTTATCCCAATTGAAAGAACCAGTATCAGGGTTGCCATTGGAGCTAGAATCTACCTTGTCATCACACAGTGACAGTGCCATATACGGTGAACAGAAACAGCCTACTGAAGACACCATCTCAGAAGATGGGAATGTTGATATTGATACCCATATGGTCGACACCAATAACAAAGCTGGTTCAATCAAGAGAAGAGACTGGAGGAGAGTGAGGAAAAATTATGAGCATAGTAAGCAGTACCTTTTTGTTGCCGCCACACTTCCTGTGAATGGGAAGAAAACAGCTGGAGCAATATTAAAACACATGTTTCCTGATGCTGAGTGGGTTAGTGGAAATTATCTTCATTGTCACAATCCAAGATTGGAGCAGAGGTGGGTTGAAGTTACTGTTGATACACAGGTGGATGAACTCATAAAAGCTGTGAGACAAGGTTTCAGTCAAGATTTGGATGGTTTTGGGGGCATTTCTCGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCAGTGGCAAAGATATTGGTCAGATCTGGGATTGAATGTTTACGCTATCATAAGGATCGCACCTTGGATGAGCGAGCTAAGGCCTTAGTTGAATTCCGAGAGAAAGGTGGTGTTCTTGTATGTACTGATGCAGCTGCTCGTGGTGTTGACATTCCAAACGTCTCACATGTTATCCAGTTCTTGCAATGTTCATATGAATTGCTGTCTTTCAAATTAAACTATTGA 1539 0.4334 MIIYRSALMLHLQIPSIRSHVFSHFKHTYFFRFTSSPSLVNVPFISLSRPRQRLFKAFGSAIVAAANTKRIDTFLAEEDVSWNSLRLSDAISRALSSIGLDRPSLVQASSIPSVLSGKDVVIAAETGSGKTHSYLVPLIDKLRGSHYNSANAVSYQKEPLCKILLVLCPNVQLCEQVAQMANSICGDDGTPMVSVAAICGRQGWPIHEPDIIVTTPVALLNYVEQNRNRRMEFMRSVKYVVFDEADMLLCGSFQNKVIRLINLLRFDEKLLSQLKEPVSGLPLELESTLSSHSDSAIYGEQKQPTEDTISEDGNVDIDTHMVDTNNKAGSIKRRDWRRVRKNYEHSKQYLFVAATLPVNGKKTAGAILKHMFPDAEWVSGNYLHCHNPRLEQRWVEVTVDTQVDELIKAVRQGFSQDLDGFGGISRTMVFANTVEAVEAVAKILVRSGIECLRYHKDRTLDERAKALVEFREKGGVLVCTDAAARGVDIPNVSHVIQFLQCSYELLSFKLNY 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1745g0004 512 SMART helicmild6 438 502 IPR001650 -
Prci1745g0004 512 Pfam Helicase conserved C-terminal domain 426 498 IPR001650 -
Prci1745g0004 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 498 IPR027417 -
Prci1745g0004 512 Gene3D - 383 502 IPR027417 -
Prci1745g0004 512 Pfam DEAD/DEAH box helicase 106 267 IPR011545 GO:0003676|GO:0005524
Prci1745g0004 512 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 86 498 - -
Prci1745g0004 512 CDD DEADc 91 271 - -
Prci1745g0004 512 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 402 512 IPR001650 -
Prci1745g0004 512 SMART ultradead3 99 393 IPR014001 -
Prci1745g0004 512 Gene3D - 62 372 IPR027417 -
Prci1745g0004 512 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 111 374 IPR014001 -
Prci1745g0004 512 CDD SF2_C_DEAD 390 498 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1745g0004 74 264 Eukaryotic Initiation Factors Gene Family AT3G13920 24.378 4.28e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1745g0004 - - gsj:114423204 652.899