Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1744g0002 ATGGCAAAGGAAGCCACGAGGTCGCGAAAGAGGTCTCTCTCACCTCCCCCTGCTTCTGCTTCCGATGAACGCTCTACAAGAACTTCTTCTGACAGCACGGTAGTGTTGAGGGTAAAATTCAATGAGGGGACGAAGAGATCTTCCCAGCTGACTCAGTCAGGGAAGAAACCCAAGGCAAAGCAAAAGAAGATTAACAAAAAACTTGATGCTAAGAAGCCAAAGAAACCCCCAACTGCTTTCTTCTTCTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTTAAGTCAATGCGTGATATTGGCAAGGCTTGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTACGATATAGCCACTGAAAAACGAGCAGAATTTGATAGAGCAATGATCGAATATAACATGAAAATGGAAAGTGGAGAGTACGAAGAATCTGACGAGGAATCAGAGTTTGATCTGTAA 486 0.428 MAKEATRSRKRSLSPPPASASDERSTRTSSDSTVVLRVKFNEGTKRSSQLTQSGKKPKAKQKKINKKLDAKKPKKPPTAFFFFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMIEYNMKMESGEYEESDEESEFDL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1744g0002 161 CDD HMG-box_AtHMGB1-like 78 134 - -
Prci1744g0002 161 MobiDBLite consensus disorder prediction 12 55 - -
Prci1744g0002 161 SMART hmgende2 72 143 IPR009071 -
Prci1744g0002 161 MobiDBLite consensus disorder prediction 1 75 - -
Prci1744g0002 161 SUPERFAMILY HMG-box 58 141 IPR036910 -
Prci1744g0002 161 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 73 142 IPR009071 -
Prci1744g0002 161 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 46 157 IPR031061 -
Prci1744g0002 161 Pfam HMG (high mobility group) box 73 142 IPR009071 -
Prci1744g0002 161 MobiDBLite consensus disorder prediction 56 70 - -
Prci1744g0002 161 Gene3D High mobility group box domain 66 158 IPR036910 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Prci1744g0002 HMG_box 1.1e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1744g0002 - - vum:124844238 158.688