Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1741g0001 ATGCCCACAAAACTCCTATCGCAACTCCATCTCATCCAAGTTTCTTCCATCGCTCGCCTCCCTTCCATGAAGCTTGGAGTCTCCGTTCCGACGTCCCGGGCAGTCCCCATTGTCTCTCGTATCTTCCCCTTCAGGCTCAAGTACCTCGGGTTGGAGTCTCGTGCTGTACGGAATGAACTTCTCGGTGTGCGCCGATTCTCGACTCGGTCCTTTCCTGGGAGGGCTGGGTCGAGGGCTGAGTTCAACCGGGGGAATCGGGATGCAGAAAGGATCAGGGTTTCGAAGAGCTTGGTTGAGGACGAGGATGAACTCAGCGACTGGGTTGACGAGTTGAAGACCGATTCTTATCGAGGTCGACTCACCAGCGAAGAGGACGACTCGGACAGGGAGAAGGATCGCAATGGAGGGAGGAGCAGAGTATCTGAGTCGATGAGAGGGAGGAGGGAGACTGGCTTGGGCAGATTTGGTGAATCATCTCGGAGGAGAACTCGGGATACATTTGAGTCGTTTTCGAGGAATTCTCGTGTGAGTCGGCGATTTGAAGATGATGAAGACGAGGAGGGAAATGAATCCCGCCATTGGAGAAGCGGTCGAGTGTCCGAAGGTCGGAATGTGAAGTCTCTCTTGGGGAAGAGAAGCGGTGGGGAGTTGCGAAGAGGGAGAAGGGATGGAAGGAGAAAATCGTATTCGATTAGTGAGGATGATGCTGATGAAGATGAACAGGAAGCAAAGAAGTTCATGGGACGCTTTGGAGATCTTATCAGCGAAGAAGATAGTGACGCTGAAGATACTGTAGATGAAGATGGTGATGATAATTTACTGAAGAAGGCTTTAGCTTCTCAGCTGGATCAAGCAAAGGAGCCGAAGAAGAGCGGTCCGGCAAGAGATTCTTCTGAGAGATCTGGCTCTTATTTAAGTGAGACCAAATTTGATCAATGTTCAATCTCGCCTTTATCATTGAAAGGAGTCAAGGCTGCTGGATATGAGAAAATGACCGTTGTGCAGGAGGCAACTCTTCCAGTAATTTTGAGAGGTAAGGATGTCCTAGCCAAGGCTAAAACAGGTACCGGAAAAACGGTTGCCTTTTTGCTTCCATCTATTGAAGTTGTTGAAAAGTCACCTCCTTTTGATCATGATCAAAAGCGGCCTCCAATCCTTGTGCTTGTCATATGCCCGACTCGAGAGCTTGCAAGTCAAGCTGCCGCAGAAGCCACTAAACTACTGAAGTTCCACCCTTCCATTGGCGTTCAAGTTGTGATTGGAGGGACAAGACTTGCGTTGGAACAGAAACGCATGCAAGCTAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGGCTTAGAGACCATATTGAGAATACAGCAGGCTTTGCAACTCGGCTGATGGGCGTGAAAGTCCTTGTTCTTGATGAAGCTGATCATCTACTAGACATGGGATTTCGCAAAGACATTGAGAGGATCATTGCTGCAGTTCCTAAACAACGACAAACACTTATGTTTTCTGCCACTGTTCCAGAAGAGGTCCGTCAAGTCTGCCATATTGCATTGAGAAGAGATCATGAATTTATCAATACAGTTGAAGAGGGTAGTGAGGAGACACATTCACAGGTTCAGCAGAGGCACTTAGTTGCACCATTAGACAAACATTTCTCCTTGCTCTACCTTCTTCTAAAGGAGCATATTGCTGACGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTGCTGACCTTCTTGGTGAGTTGAAGTTGAATGTGAGAGAAATTCATTCAAGAAAGCCTCAGAACTATAGAACCAGGGTCTCTGAGGAGTTTCGGAAGTCCAAGGGCCTTATCCTTGTAACTTCAGATGTATCTGCCCGTGGAGTTGATTATCCAGACGTCACTCTGGTTATACAGTTGGGTTTACCAGCTGATAGAGAACAGTATATCCACCGACTGGGTCGAACAGGGCGGAAAGGTAAAGAAGGGCAAGGCGTACTGTTGCTAGCTCCTTGGGAAGAATTCTTTTTATCTGCCGTAAAGGATCTGCCCATTACAAAAGCTCCAGCACCTTCAATTGATCCTGACACACAGAAAAAGGTGGAAAGGGCCCTAGCCCATGTGGAGATGAAGAATAAGGAAGCAGCGTATCAATCCTGGCTTGGTTTCTACAATTCCATCTCGAAAGTGGGGAAGGACAAGTATAGGCTAGTGGAGTTGGCAAATGAATTCAGTAGAAGCATGGGGCTTGATAACCCTCCCGCTATTCCAAAGCTAGTCCTTGGCAAGATGGGCCTCAGAAATATACCTGGTTTACGTTCCAAATAG 2331 0.4762 MPTKLLSQLHLIQVSSIARLPSMKLGVSVPTSRAVPIVSRIFPFRLKYLGLESRAVRNELLGVRRFSTRSFPGRAGSRAEFNRGNRDAERIRVSKSLVEDEDELSDWVDELKTDSYRGRLTSEEDDSDREKDRNGGRSRVSESMRGRRETGLGRFGESSRRRTRDTFESFSRNSRVSRRFEDDEDEEGNESRHWRSGRVSEGRNVKSLLGKRSGGELRRGRRDGRRKSYSISEDDADEDEQEAKKFMGRFGDLISEEDSDAEDTVDEDGDDNLLKKALASQLDQAKEPKKSGPARDSSERSGSYLSETKFDQCSISPLSLKGVKAAGYEKMTVVQEATLPVILRGKDVLAKAKTGTGKTVAFLLPSIEVVEKSPPFDHDQKRPPILVLVICPTRELASQAAAEATKLLKFHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIERIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVEEGSEETHSQVQQRHLVAPLDKHFSLLYLLLKEHIADDVDYKVLVFCTTAMVTRLVADLLGELKLNVREIHSRKPQNYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQLGLPADREQYIHRLGRTGRKGKEGQGVLLLAPWEEFFLSAVKDLPITKAPAPSIDPDTQKKVERALAHVEMKNKEAAYQSWLGFYNSISKVGKDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRSK 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1741g0001 776 SMART helicmild6 580 661 IPR001650 -
Prci1741g0001 776 SMART ultradead3 327 540 IPR014001 -
Prci1741g0001 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 339 522 IPR014001 -
Prci1741g0001 776 CDD SF2_C_DEAD 537 670 - -
Prci1741g0001 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 678 IPR027417 -
Prci1741g0001 776 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 308 336 IPR014014 GO:0003724
Prci1741g0001 776 PANTHER RNA HELICASE 264 703 - -
Prci1741g0001 776 Gene3D - 531 755 IPR027417 -
Prci1741g0001 776 Pfam Helicase conserved C-terminal domain 557 661 IPR001650 -
Prci1741g0001 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 499 IPR027417 -
Prci1741g0001 776 MobiDBLite consensus disorder prediction 212 233 - -
Prci1741g0001 776 MobiDBLite consensus disorder prediction 280 306 - -
Prci1741g0001 776 Pfam DEAD/DEAH box helicase 333 510 IPR011545 GO:0003676|GO:0005524
Prci1741g0001 776 Gene3D - 270 523 IPR027417 -
Prci1741g0001 776 CDD DEADc_MSS116 315 524 - -
Prci1741g0001 776 MobiDBLite consensus disorder prediction 118 242 - -
Prci1741g0001 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 556 707 IPR001650 -
Prci1741g0001 776 MobiDBLite consensus disorder prediction 118 200 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1741g0001 308 689 Eukaryotic Initiation Factors Gene Family AT3G19760 28.643 3.74e-45 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1741g0001 - - qsa:O6P43_027365 1048.88