Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci1720g0002 | ATGAGTTTTCAAGATATTCAGGGCGGGCCCAAGCGACCTGCTTCCCGAACTCAATCGCCGTCGCAGGCGGTTGCTGCGGGGATTTTCCAGATCAATACAGGCGTTGCCACTTTCCGACGACTCGTTGATGCCATTGGAACCGTCAAAGACACCGTTGGTCATCGCCAGAAGCTGCACGATACGAGGCAGCGGATACTGCAGCTGGTGAAGGATACTTCTGCAAAGCTCAAAGCCTTGAGCGAATCCGATCTTGCTGCCGGTGCTGATTCTGGTAAGAAAATTGAAGATGCTAAGCTGGCGAGAGATTTCCAAACCACGTTACAAGAATTCCAGAGAGTGCAACAGCTTGCTTCTGAGCGCGAATCTACCTACCTTCCTGCTGCTCCTGCTTCTTCTTTACCAACGAGCTTTGGCTCTGGTGGAGAATCAACTGGCATAGGTCTGGAAAGCCAACCTTTTATTAGAGAACAAAAGAGGCGGGAGATACTTTTATTGGATAATGAAATTGCATTCAACGAGGCCATGATTGAAGAAAGAGAACAGGGCATCAAGGAGGTAGAGGTGCAAATTGGACAAGTAAATGAAATATTCAAGGACCTAGCCGTTCTGGTTCATGAGCAGGGGGTTGTTATTGATGATATTCAATCAAATATTGATGCTTCTGCGGGTGCAACAACCCAAGCTACTACACAGTTAGCCAAGGCTTCCAAAAGTATGAAATCTAAGTCTTCATGGTGTTGGTGGGTGCTTGTAATTTTTGTTATAGTGGTGGTCGTCCTCGTTGTTTTTCTCATCATTTAG | 801 | 0.4669 | MSFQDIQGGPKRPASRTQSPSQAVAAGIFQINTGVATFRRLVDAIGTVKDTVGHRQKLHDTRQRILQLVKDTSAKLKALSESDLAAGADSGKKIEDAKLARDFQTTLQEFQRVQQLASERESTYLPAAPASSLPTSFGSGGESTGIGLESQPFIREQKRREILLLDNEIAFNEAMIEEREQGIKEVEVQIGQVNEIFKDLAVLVHEQGVVIDDIQSNIDASAGATTQATTQLAKASKSMKSKSSWCWWVLVIFVIVVVVLVVFLII | 266 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci1720g0002 | 266 | Gene3D | - | 167 | 266 | - | - | |
| Prci1720g0002 | 266 | Pfam | SNARE domain | 210 | 261 | IPR000727 | - | |
| Prci1720g0002 | 266 | CDD | SNARE_Qa | 176 | 232 | - | - | |
| Prci1720g0002 | 266 | FunFam | Syntaxin-22 like | 166 | 266 | - | - | |
| Prci1720g0002 | 266 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 173 | 235 | IPR000727 | - | |
| Prci1720g0002 | 266 | Pfam | Syntaxin-like protein | 25 | 124 | IPR006011 | GO:0016020 | |
| Prci1720g0002 | 266 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Prci1720g0002 | 266 | SUPERFAMILY | t-snare proteins | 18 | 228 | IPR010989 | GO:0016020|GO:0016192 | |
| Prci1720g0002 | 266 | PANTHER | SYNTAXIN | 22 | 256 | IPR045242 | - | |
| Prci1720g0002 | 266 | Gene3D | - | 11 | 132 | - | - | |
| Prci1720g0002 | 266 | FunFam | Syntaxin-22 like | 15 | 128 | - | - | |
| Prci1720g0002 | 266 | SMART | tSNARE_6 | 168 | 235 | IPR000727 | - | |
| Prci1720g0002 | 266 | SMART | SynN_4 | 8 | 122 | IPR006011 | GO:0016020 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci1720g0002 | 1 | 253 | SNARE and Associated Proteins | AT5G46860 | 58.366 | 1.40e-97 | 285 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci1720g0002 | - | - | gmx:100787141 | 373.244 |