Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1664g0001 ATGAGTCGCTACGACAGTCGCTCTGGGGACCCTACTTCCTACCGTGACAGGAGAAGTGATTCGGGGCTAGGTGCTCCCACAGGTTATGGTGGTTCTGTCCACTCTTCCTCAAGCAAAAGGGATTACAATGATGGTGAATCTCCAAGGAAATTGAATGTGGATGGCCTGCCTCATTTTGAGAAGAATTTCTATATCGAATCACCAGAGGTGAGGGCTATGACTGAGGCTGAGGTTAATGAGTATCGGCAGAAGAGGGAGATTACTGTTGAAGGCCGAGATGTCCCAAAACCAGTCAAAAACTTTCACCTTGCTGGTTTCCCAGAGTATGTTCTGCAAGAAATTACGAAGGCTGGTTTTGTTGAACCCACACCCATTCAATCTCAAGGTTGGCCAATGGCTTTGAAGGGGCGTGATCTCATAGGAATAGCAGAGACCGGTTCGGGGAAAACACTTGCTTATTTATTGCCTGCAATTGTACATATTAATGCCCAGCCTATTCTTGAACCTGGAGATGGACCAATTGTGCTAGTTTTGGCTCCAACTCGTGAACTTGCTGTCCAAATACAACAAGAGGCTACTAAGTTTGGCTCATCATCTAGGATTAAAAGTACGTGCATATATGGTGGGGTACCTAAGGGACCTCAGGTGCGGGACCTCCAGAAAGGTGTTGAAATTGTAATTGCTACTCCGGGAAGGTTGATTGACATGCTTGAGTCAAATCATACTAACTTACGGAGAGTTACATACCTTGTGTTAGATGAGGCTGATAGGATGTTGGACATGGGCTTTGAGCCTCAGCTACGGAAGATTGTTGCTCAGATTCGTCCAGACCGTCAAACATTATGCTGGAGTGCTACCTGGCCAAGGGAGGTTGAGCAGCTGGCCAGGCAGTCCCTTTATAACCCATACAAAGTGATTATAGGCTCTCCAGATTTAAAAGCTAACCATGCAATACGTCAACATGTTGACATTGTTTCTGAAAAACAGAAATATGATAAATTGGTGAAGTTGCTGGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCAGATCACTCGGCAGCTCCGCATGGATGGTTGGCCAGCACTTTCAATACATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTGTCAGAGTTCAGATCGGGAAAGAGTCCTATTATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGATGTGAAGGATGTGATGTATGTAATAAATTATGACTTCCCGGGATCTCTTGAGGACTATGTTCATCGCATTGGTCGGACTGGGAGAGCTGGCGCAAAGGGAACTGCATATACATTCTTTACTGCTGCGAATGCTAGATTTGCGAAGGAGCTTATTGCCATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTGGCAGCTATGGCCCGTGGAGCACCTCCTCCACCTTCAGGTTATGGAGGTTTCCGTGGGAGAGGTTATGGCAGTGGTCGCCCGCTCAGATGA 1512 0.463 MSRYDSRSGDPTSYRDRRSDSGLGAPTGYGGSVHSSSSKRDYNDGESPRKLNVDGLPHFEKNFYIESPEVRAMTEAEVNEYRQKREITVEGRDVPKPVKNFHLAGFPEYVLQEITKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHINAQPILEPGDGPIVLVLAPTRELAVQIQQEATKFGSSSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFEPQLRKIVAQIRPDRQTLCWSATWPREVEQLARQSLYNPYKVIIGSPDLKANHAIRQHVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVMYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMARGAPPPPSGYGGFRGRGYGSGRPLR 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1664g0001 503 MobiDBLite consensus disorder prediction 39 54 - -
Prci1664g0001 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 454 IPR027417 -
Prci1664g0001 503 Pfam DEAD/DEAH box helicase 123 294 IPR011545 GO:0003676|GO:0005524
Prci1664g0001 503 MobiDBLite consensus disorder prediction 1 17 - -
Prci1664g0001 503 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 77 478 - -
Prci1664g0001 503 MobiDBLite consensus disorder prediction 1 54 - -
Prci1664g0001 503 MobiDBLite consensus disorder prediction 476 503 - -
Prci1664g0001 503 Pfam Helicase conserved C-terminal domain 330 439 IPR001650 -
Prci1664g0001 503 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 251 259 IPR000629 -
Prci1664g0001 503 FunFam ATP-dependent RNA helicase RhlB 309 481 - -
Prci1664g0001 503 CDD SF2_C_DEAD 318 448 - -
Prci1664g0001 503 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 478 IPR001650 -
Prci1664g0001 503 SMART ultradead3 118 321 IPR014001 -
Prci1664g0001 503 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 127 IPR014014 GO:0003724
Prci1664g0001 503 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 305 IPR014001 -
Prci1664g0001 503 Gene3D - 62 308 IPR027417 -
Prci1664g0001 503 SMART helicmild6 358 439 IPR001650 -
Prci1664g0001 503 CDD DEADc_DDX5_DDX17 110 305 - -
Prci1664g0001 503 Gene3D - 309 480 IPR027417 -
Prci1664g0001 503 FunFam probable ATP-dependent RNA helicase DDX17 61 308 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1664g0001 86 459 Eukaryotic Initiation Factors Gene Family AT3G19760 33.600 2.83e-73 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1664g0001 K12823 - gmx:100790464 900.582