Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1658g0001 ATGGAAATTGATCTGAACCATGCAGTGACTGAGGTCGAGAAGAATGCCTTCTGCGATGGGCGCTGTGAGCAAGGCACTTGTGCTTCGTGTTTCTCTTCTTCCACTTCTTCCTCTCCCAACTCGCCTTCACCTCGCGTCTCTTCTTCTTATCTCGAACTCTGGCATGCTTGTGCCGGCCCCCTCACCTCCCTCCTAAAGAAAGGAAATGTAGTGGTCTACTTTCCCCAGGGTCATCTTGAACAGCTTGCCTCTTTCTCTCCTTTCTCGCCCGGTGACATGCCCACCTGTGACCTTCAACCGCAAATCTTCTGCAGCGTCGTCAACGTCCAGCTTCTTGCCAACAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCCCAGACAGAGTTAGCAGGAATGCACTTGGAGGGCCAAGAACTTGAGAAATTGGGAGCATATGAGGAGGGAAATGGAGGATTACCCGCAAAATCAACCCCTCACATGTTCTGCAAAACGCTTACTGCTTCTGATACTAGCACTCACGGGGGGTTCTCCGTTCCTCGCAGGGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAAAGACCCTCCCAAGAGCTTGTTGCAAAAGACCTTCACGGAGTAGAGTGGAAATTTCGCCATATTTACAGAGGTCAGCCAAGGCGGCACTTGCTCACAACTGGCTGGAGTATTTTTGTCAGCCAAAAGAATCTTGTATCTGGCGATGCAGTACTTTTTCTGAGAGGTGAAAGTGGAGAACTGAGATTGGGAATCAGGAGATCTGTTCGACCTAGAAATGGTCTTCCAGAGTCAATTATTGGTGATCAGAATTGCTATCCTAATTTCCTGTCTGCAGTGGCTAATGCCGTATCCACCAAAAGCGTGTTTCATGTTTTCTACAGCCCAAGGGCAAGTCATGCAGATTTTGTTGTCCCTTACCAGAAATATGTCAAAAGCATCAAGAATCCAATGACCATTGGGACAACATTCAAGATGAAATTTGAAATGGATGAATCTTCTGAAAGAAGGTGCAATGGTGGTATAGTGACTGGAATGCGTGATTTGGATCCCTACAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTAAGATGGGATGACGAAATTGCTACTAATCATCAAGATCGAATTTCTCCATGGGAGATTGAACCTTCTGTTTCTCTCCCGCCCTTTAGCATCCAGTCATCCCCAAGACTAAAGAAATTGCGGACAGGTCTGCAAACTGCCACTTCAAGTCACCTCATGACCGGAGGTGGCAGTGCATTTATGGACTTTGAGGAGTCCGTAATATCACCCAAGGTCTTGCAAGGTCAAGAAAATACAGGTTTTGCATCATACTATTTTGGGCGTGATGCATTGAAGAACCAGCCAGATTTTGAGATGAGTCCTCCCAGTCATCCAAATCTTGCATCCACTGGATTAAGAAAGGCTGCTGCTGCTGAGCTTATGAGGGTTCACCCTTCTAGTTATGCAGGCTTCGCTGAGACTAACAAGTTTCTAAGGGTCTTGCAAGGTCAAGAAATATGTCCACTGCAATCTCTGAAAGGAAAGGCTGATTTTAACCTTGGGGTTTGGAGTAAACCCAATGCCAGTTGCACAACTTTGAACCAACGACAGGCATCCAAAACCAACTTTGACACTTTAGGATCAGAAGACCTTCAAACTGCTTATTTTCCTTTCGGTGACATTCACAGAGCTGGTCAAAGCAGCCTGTTTTGCTCTAAATCTGCAAATTTCCTGAGAGAGGATGTCCACGCTCCTTCCACTCAGGCAGAGCTCACATTAAAGGAAGTTGGACGGTCAGAACTCTCAAACAAGGACAAACTGCAGGGCAGTTTTTCTGCTGCTGCTTCTTTAGAAGCAAGTCTAAGGATTTCAAATGACGATAATTATGAGGGGAAGGTAACTGCCTGTAAACTATTTGGGTTTCCCTTTAGGGAAGGCAACTCTCTGAACTTGCAGGGCTCTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGACCTCTCAAGACTGAGCAGCTACAGTGACCTGTTGAGTGAACTAGAGCGACTGTTTGGCATGGAAGGCCTTATAAAGGATCCTGATAAAGGATGGAGTCTGTACACCGATAGTGAAGATGACATTATGGTTGTAGGGGATGACCCGTGGCATGAGTTCTGCAGTGTAGTGTCTAAGATCCATATATATACCCAAGTAGAAGTCGAGAAGATGACAATTGGGATGATTACTGATGATACTCACAGCTGTTTGGAACAGGCACCAGGGGTAATGGAGGCTTCCAAGTCCTCATCTGTGGGCCAGCCAGATTCTTCTCCTACAGAAGTTAGAGTCTGA 2394 0.4612 MEIDLNHAVTEVEKNAFCDGRCEQGTCASCFSSSTSSSPNSPSPRVSSSYLELWHACAGPLTSLLKKGNVVVYFPQGHLEQLASFSPFSPGDMPTCDLQPQIFCSVVNVQLLANKENDEVYTQVTLLPQTELAGMHLEGQELEKLGAYEEGNGGLPAKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGESGELRLGIRRSVRPRNGLPESIIGDQNCYPNFLSAVANAVSTKSVFHVFYSPRASHADFVVPYQKYVKSIKNPMTIGTTFKMKFEMDESSERRCNGGIVTGMRDLDPYRWPKSKWRCLMVRWDDEIATNHQDRISPWEIEPSVSLPPFSIQSSPRLKKLRTGLQTATSSHLMTGGGSAFMDFEESVISPKVLQGQENTGFASYYFGRDALKNQPDFEMSPPSHPNLASTGLRKAAAAELMRVHPSSYAGFAETNKFLRVLQGQEICPLQSLKGKADFNLGVWSKPNASCTTLNQRQASKTNFDTLGSEDLQTAYFPFGDIHRAGQSSLFCSKSANFLREDVHAPSTQAELTLKEVGRSELSNKDKLQGSFSAAASLEASLRISNDDNYEGKVTACKLFGFPFXREGNSLNLQGSAKRSCTKVHKQGSLVGRAIDLSRLSSYSDLLSELERLFGMEGLIKDPDKGWRXLYTDSEDDIMVVGDDPWHEFCSVVSKIHIYTQVEVEKMTIGMITDDTHSCLEQAPGVMEASKSSSVGQPDSSPTEVRV 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1658g0001 799 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci1658g0001 799 SUPERFAMILY CAD & PB1 domains 674 750 - -
Prci1658g0001 799 ProSiteProfiles PB1 domain profile. 671 755 IPR000270 GO:0005515
Prci1658g0001 799 MobiDBLite consensus disorder prediction 779 799 - -
Prci1658g0001 799 Pfam AUX/IAA family 668 755 IPR033389 -
Prci1658g0001 799 CDD B3_DNA 162 264 IPR003340 GO:0003677
Prci1658g0001 799 Gene3D - 162 266 IPR015300 -
Prci1658g0001 799 FunFam Auxin response factor 162 266 - -
Prci1658g0001 799 SMART B3_2 164 266 IPR003340 GO:0003677
Prci1658g0001 799 FunFam Auxin response factor 327 400 - -
Prci1658g0001 799 FunFam Auxin response factor 666 760 - -
Prci1658g0001 799 Gene3D - 667 760 - -
Prci1658g0001 799 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Prci1658g0001 799 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 22 30 IPR006058 GO:0051537
Prci1658g0001 799 Gene3D - 328 400 - -
Prci1658g0001 799 SUPERFAMILY DNA-binding pseudobarrel domain 156 271 IPR015300 -
Prci1658g0001 799 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Prci1658g0001 799 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 760 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci1658g0001 799 MobiDBLite consensus disorder prediction 774 799 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1658g0001 47 799 B3 DNA Binding Superfamily AT5G60450 59.577 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci1658g0001 B3 1.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1658g0001 - - gmx:100783513 1206.05