Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci163g0002 ATGCCCCTCATGATCGATCACCAATCTAGCTTCAAGTACTTCTGCAAGATCTGCAAGAAAGGATTTGGCTGTGGCAGAGCTCTCGGAGGCCACATGAGGGCGCACGGCATCGGAGATGAGAGCAGCGGAGCTATGGATGACGATGACGACGCGGCAAGCGACTGGGAAGATGGCAAGCTTGTTGGTGGAGACGACAATAATAATGCTAATGTTCCTCCGGCTAACAAGCGGATGTACGCTTTGAGGACGAACCCTAATCGGCTAAAGAGTTGCAGGGTTTGTGAGAATTGCGGGAAAGAGTTCTTGTCTTGGAAGTCCTTCCTTGAACATGGCAAGTGCACTTCCGATGATGCCGATGAGTCGTTTGTTTCATCGCCGGGATCCGACGGCGATGATGTGTCGGGTCGGAGAGGTTGTGGTTGGTCCAAGAGAAAGAGGTCATTTCGAGCCAAAGTGGGCAGCTTCAATAATAATAATAATAATAATCCTAATTGCTCTTCATCCAATGAGGAAGAAGATCTCGCTAATTGTTTGATGATGCTGTCCAACGCCACCGTGGATCCTCTCGTGCCTGACGCCGACGAATCATCGGCATCGGCGAGCAAAGACGATGAGAGAAGAAACGCTAATTTCAGCTTCATGGCTCCCATCTCTCAAGTCCCTTTGGATCATAACAAAGCCAAGGAGGCAAGCAATAAGGGCTTGTTTGAATGCAAAGCATGCAAGAAGGTCTTTAATTCCCATCAAGCATTGGGTGGTCACAGAGCCAGCCACAAGAAAGTCAAAGGCTGCTTCGCTGCTAGGCTCGACAACCTCGAAGATGGCGGTGGCGGCATGGGCGGCGCAACCGGTGGCGCCGATGATGATATCATCACACATGAAGACCAACTCTTTCCAACGAATAAATCAAGCAATTCAATGCTTCATTTCGATCATGGCTCCAATAACGCTGCCTCGTCGTCTAAGAGGAAATCGAAAGTTCATGAATGCTCAATATGTCACCGAGTTTTCTCGTCGGGACAAGCACTGGGAGGACACAAGAGGTGTCATTGGATTACGTCGAACGCGCCGGACGCTTCGACGTTGGCTAGATTTCAACAATTTCAAGACCACATAGAACAACACATGATGAATCATAATAGTAACAATAATCAAATACTTAAGTTTGACGATCCCGACCCAATTGATCTAAAGCTGGACCTCAACCTCCCGGCTCCGTCGCCCCCAGAACTTGCCGGCCGGTGTAATGTCTCCGCAGCGATTTACTTACAGTCATGGGTAGGAGGAGGAGGAGGAAAGGAGCAACATAAAAATGACAATAGTACTCACGACATGGACATTGAGAATAACGATGAAGATCAATGCAAGAACAATGACAAAAAACTTAATATTAGCAATGGTACGACGATGCAGAGCATGGAAGACGAAGCTGACAGTAAGGTGAAGCTAGCGAAATTAAGTGAACTAAAGGACATGAACGTAGGAGGGAGTTCTTCGCCATGGTTGCAGGTGGGAATCGGTTCAACTACAACTGACGTGGGAACTGACCCATAA 1554 0.4807 MPLMIDHQSSFKYFCKICKKGFGCGRALGGHMRAHGIGDESSGAMDDDDDAASDWEDGKLVGGDDNNNANVPPANKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSDDADESFVSSPGSDGDDVSGRRGCGWSKRKRSFRAKVGSFNNNNNNNPNCSSSNEEEDLANCLMMLSNATVDPLVPDADESSASASKDDERRNANFSFMAPISQVPLDHNKAKEASNKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNLEDGGGGMGGATGGADDDIITHEDQLFPTNKSSNSMLHFDHGSNNAASSSKRKSKVHECSICHRVFSSGQALGGHKRCHWITSNAPDASTLARFQQFQDHIEQHMMNHNSNNNQILKFDDPDPIDLKLDLNLPAPSPPELAGRCNVSAAIYLQSWVGGGGGKEQHKNDNSTHDMDIENNDEDQCKNNDKKLNISNGTTMQSMEDEADSKVKLAKLSELKDMNVGGSSSPWLQVGIGSTTTDVGTDP 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci163g0002 517 ProSitePatterns Zinc finger C2H2 type domain signature. 330 350 IPR013087 -
Prci163g0002 517 MobiDBLite consensus disorder prediction 301 321 - -
Prci163g0002 517 Pfam C2H2-type zinc finger 236 260 - -
Prci163g0002 517 Pfam C2H2-type zinc finger 13 35 - -
Prci163g0002 517 Pfam C2H2-type zinc finger 327 352 - -
Prci163g0002 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 328 350 IPR013087 -
Prci163g0002 517 MobiDBLite consensus disorder prediction 118 140 - -
Prci163g0002 517 MobiDBLite consensus disorder prediction 428 459 - -
Prci163g0002 517 PANTHER OS02G0659100 PROTEIN 4 510 - -
Prci163g0002 517 Gene3D Classic Zinc Finger 233 350 - -
Prci163g0002 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 263 IPR013087 -
Prci163g0002 517 MobiDBLite consensus disorder prediction 492 517 - -
Prci163g0002 517 MobiDBLite consensus disorder prediction 436 459 - -
Prci163g0002 517 SUPERFAMILY beta-beta-alpha zinc fingers 13 258 IPR036236 -
Prci163g0002 517 SMART c2h2final6 236 258 IPR013087 -
Prci163g0002 517 SMART c2h2final6 13 35 IPR013087 -
Prci163g0002 517 SMART c2h2final6 328 350 IPR013087 -
Prci163g0002 517 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Prci163g0002 517 SUPERFAMILY beta-beta-alpha zinc fingers 325 351 IPR036236 -
Prci163g0002 517 ProSitePatterns Zinc finger C2H2 type domain signature. 238 258 IPR013087 -
Prci163g0002 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 35 IPR013087 -
Prci163g0002 517 MobiDBLite consensus disorder prediction 38 73 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci163g0002 110 403 C2H2 Transcription Factor Family AT1G02040 34.915 3.52e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci163g0002 zf-C2H2_6 1.3e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci163g0002 - - gmx:100793846 600.127