Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1628g0002 ATGACGATAGCTTCCATCTTCAGCAAAGCTGCCAGGGCTTTCCATGGCTGTCCTTCCTCTTCTAAGCTGCTCCTCTTCTGCGCTCTCAGTGGTGGCAGTGTGGTGGCATACTCAGAATTACAATCCGATTCTGGGTCCCCCAGTATTGAAACTAATGAACCTAGGAAAAAGAGAGTGGTGGTTCTAGGAACTGGATGGGCTGGTACCAGTTTCCTTAAGGACCTGGATGCTTCGATATATGATGCTCAGGTTGTTTCACCTCGCAACTACTTTGCATTTACTCCCTTATTACCCAGTGTCACCTGTGGGACAGTTGAAGCAAGGAGCATTGTGGAGCCAGTTCGAAACATCATAAAAAAGAGAAAAGGAGAAATTAAATTCTGGGAGGCAGAGTGTGTCAAGATTGATGCTGCAAACAAAAAAGTTTTTTGTCGATCCAATATTGATGCCAACTTGGTGGGAAGTGGCGAATTTTCTCTGGAATATGACTTTTTAGTTGTAGCAACAGGAGCACAAGCGAATACTTTTAACACTCCAGGCGTCAGGGAGAACTGTCATTTTTTAAAGGAGGTGGAGGATGCTCAGAGGATCAGAACGTCTGTGATAGATTGCTTTGAGAAGGCCATGCTCCCTAGTTTAACTGATGAAGAGCGACAAAAAAATCTTCATTTTGTAATTGTTGGTGGCGGTCCAACTGGTGTGGAATTTGCTGCTGAGCTTCATGATTATGTTAATGAAGATCTTTTCAAATTATATCCAACAGCTAAAGATATGGTGAAAATAACAATGGTCCAATCAGGAGATCACATCTTGAACATGTTTGATGAAAGAATCAGTGCATTTGCTGAGCAGAAATTCAGAAGAGATGGTATAGAAGTTCAAACAGGATGCCGAGTTATCAATGTTACTGATAAGGAAATTAAAATGAAGATAAAATCAACAGGAGAGGTTTGCTCAATACCTCATGGTTTGGTAGTCTGGTCCACTGGCATTGGGACTCTTCCAGTTGTGAGGGATTTCATGGAACAAATTAATCAGGCAAATAGAAAGGTCCTGCAAACTGATGAATGGTTACGAGTGATAGGATGTGAAGCTGCATACGCTATTGGGGACTGTGCTTCAATACATCAACGTAAAATCATGGATGATATCTCAAGCATATTCAAAGCTGCAGACAAGGACAACTCTGGTACCTTAACCATTAAAGAATTCAAGGATGTGATGGATGACATCATCTTGAGATATCCTCAAGTGGAACTATACCTGAAGAGCAAGCATATGCTTGATGTGGCTGATCTTTGGAAAGATTCTCAGGGGAAAGACACAGAAGAAATAGACATAGAAGGGTTTAAGTCAGCCCTTTGTCATGTGGATTCACAGATGAAGAGTCTGCCAGCAACGGCACAGGTTGCTGCCCAACAAGGTGCATATCTAGCTAGCTGCTTTAACCGCATGGAGCAATGCACTGAGAATCCTGAAGGTCCAATGAGATTTAGAGTCGGACGCCATAGGTTTCGTCCCTTCAGGTACAAGCATTTTGGTCAATTTGCTCCTCTTGGTGGAGAGCAGGCGGCGGCAGAACTTCCTGGAGACTGGGTCTCGGTGGGTCATAGCACTCAGTGGCTTTGGTACTCTGTATATGCCAGTAAGCAAGTGAGCTGGCGCACAAGGGTGCTGGTGATAGCTGATTGGACGAGAAGATTCATCTTTGGAAGAGATTCAAGTCGTATCTGA 1734 0.4354 MTIASIFSKAARAFHGCPSSSKLLLFCALSGGSVVAYSELQSDSGSPSIETNEPRKKRVVVLGTGWAGTSFLKDLDASIYDAQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEIKFWEAECVKIDAANKKVFCRSNIDANLVGSGEFSLEYDFLVVATGAQANTFNTPGVRENCHFLKEVEDAQRIRTSVIDCFEKAMLPSLTDEERQKNLHFVIVGGGPTGVEFAAELHDYVNEDLFKLYPTAKDMVKITMVQSGDHILNMFDERISAFAEQKFRRDGIEVQTGCRVINVTDKEIKMKIKSTGEVCSIPHGLVVWSTGIGTLPVVRDFMEQINQANRKVLQTDEWLRVIGCEAAYAIGDCASIHQRKIMDDISSIFKAADKDNSGTLTIKEFKDVMDDIILRYPQVELYLKSKHMLDVADLWKDSQGKDTEEIDIEGFKSALCHVDSQMKSLPATAQVAAQQGAYLASCFNRMEQCTENPEGPMRFRDXGRHRFRPFRYKHFGQFAPLGGEQAAAELPGDWVSVGHSTQWLWYSVYASKQVSWRTRVLVIADWTRRFIFGRDSSRI 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1628g0002 578 Pfam EF hand 384 409 IPR002048 GO:0005509
Prci1628g0002 578 Gene3D - 428 577 - -
Prci1628g0002 578 Gene3D - 47 397 - -
Prci1628g0002 578 SMART efh_1 383 411 IPR002048 GO:0005509
Prci1628g0002 578 Pfam Pyridine nucleotide-disulphide oxidoreductase 57 379 IPR023753 GO:0016491
Prci1628g0002 578 SUPERFAMILY EF-hand 336 464 IPR011992 -
Prci1628g0002 578 SUPERFAMILY FAD/NAD(P)-binding domain 223 377 IPR036188 -
Prci1628g0002 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 223 241 - -
Prci1628g0002 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 59 78 - -
Prci1628g0002 578 PRINTS FAD-dependent pyridine nucleotide reductase signature 162 180 - -
Prci1628g0002 578 PANTHER NADH DEHYDROGENASE 50 578 IPR045024 GO:0003954|GO:0006116
Prci1628g0002 578 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 425 577 - -
Prci1628g0002 578 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 48 408 - -
Prci1628g0002 578 SUPERFAMILY FAD/NAD(P)-binding domain 56 275 IPR036188 -
Prci1628g0002 578 ProSitePatterns EF-hand calcium-binding domain. 392 404 IPR018247 -
Prci1628g0002 578 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1628g0002 7 578 Chloroplast and Mitochondria Gene Families AT4G21490 66.667 0.0 802
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1628g0002 K03885 - qsa:O6P43_000666 952.584