Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci161g0004 ATGCCGATGTACCAGCCTTCTAAACGTGATGTGGTTGCTGGCTTCGACGGTGGGGGCGACGGTCAGATTCTAGATCTGGATACTGCCGTCAAGGATGGGGTTTTGGGTGGCGTTGACGGTGGGATTGTCGGAGCTGGGGCCGCTGAGAAATTGGATCTGGGGAAGATGATTCAAGAGCTCGACTTGTCCGAAGTTCCTTCGGTGTTTATCTGCCCAATCTCCCTTGAGCCAATGCAAGATCCAGTCACGCTCTGCACCGGCCAAACCTACGAGAGGTCCAACATTCTCAAATGGTTCAATTTGGGGCACCTAACCTGCCCTACCACGATGCAAGAGCTCTGGGACGATTCCATTACTCCAAATACAACTCTTTACCGTCTGATATACACTTGGTTTTCTCAGAAGTATCTGCTGATGAAGAAGAGATCGGAAGATGTGCAGGGGAGGGCGTCAGAACTCGTGGAGACGCTGAAGAAAGTGAAGGGTCAAGCTCGAGTTCAAGCCCTCAAGGAGCTCCATGATGTAGTGGCTGCTCACTCCACTGCCCGCAAGACAGTCGTTGATGAAGGTGGAGTCTCAGTAATGTCTTCCTTACTTGGTCCTTTTACTTCCCATGCTGTTGGCTGCGAGGTCATAGGTATACTTGTATGCCTGACCCTTGATTCTGAATCAAAAAAGAATTTAATGCAACCTGCTAAGCTTTCTTTAATGGTGGACATTTTGAACGAGGGTTCAACTGAGACCAAAATCAATTGTACCCGACTGATTGAATCATTGATTGAGGAGAAGGATTTTCGTTCTGAGATTATTTCAAGCCATAGCCTCTTGGTTGGGCTGATGCGGCTTGTGAAGGATAAGAGACACTCAAACGGAATATTTCCTGGGCTTAACCTCCTTAGAAAGTTATGCTTGCATAAAGAAGTTAGGAATTTGCTAGTGAGTATTGGTGCTGTTCCTCAGTTAGTTGAATTGTTATCCGGTCTGGAGCCAGAGTGTTCTGAGTTGGCGCTTTCCATTTTAGATGCATTGGCGTCGATACCTGAAGGCAGAGTAGCGTTGAAGAACTGTTCTAACACCATACCCAATATGGTGAATTACCTGATGAGAATCTCAGAGAACTGCACCCAATATGCATTGTCGATCCTATGGTCTGTATGCAAGCTTGCACCTGAGGAGTGCTCTTCCGTTGCTCTGGATGCGGGACTTGCTGCAAAGCTGCTACTCGTCATCCAAAGTGGGTGCAATCCTATATTGAAACAACAATCTGCTGAGCTTTTGAAGCTGTGTAGTTTGAATTATTCAGATACTATCTTCATTTCCAAATGCAAGCTTACTAGAACCATCCAATGA 1350 0.4659 MPMYQPSKRDVVAGFDGGGDGQILDLDTAVKDGVLGGVDGGIVGAGAAEKLDLGKMIQELDLSEVPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNLGHLTCPTTMQELWDDSITPNTTLYRLIYTWFSQKYLLMKKRSEDVQGRASELVETLKKVKGQARVQALKELHDVVAAHSTARKTVVDEGGVSVMSSLLGPFTSHAVGCEVIGILVCLTLDSESKKNLMQPAKLSLMVDILNEGSTETKINCTRLIESLIEEKDFRSEIISSHSLLVGLMRLVKDKRHSNGIFPGLNLLRKLCLHKEVRNLLVSIGAVPQLVELLSGLEPECSELALSILDALASIPEGRVALKNCSNTIPNMVNYLMRISENCTQYALSILWSVCKLAPEECSSVALDAGLAAKLLLVIQSGCNPILKQQSAELLKLCSLNYSDTIFISKCKLTRTIQ 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci161g0004 449 PANTHER WDSAM1 PROTEIN 60 435 IPR045185 GO:0061630
Prci161g0004 449 SUPERFAMILY RING/U-box 60 135 - -
Prci161g0004 449 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 137 IPR013083 -
Prci161g0004 449 CDD RING-Ubox_PUB 66 116 IPR045210 -
Prci161g0004 449 Pfam U-box domain 65 135 IPR003613 GO:0004842|GO:0016567
Prci161g0004 449 ProSiteProfiles U-box domain profile. 64 138 IPR003613 GO:0004842|GO:0016567
Prci161g0004 449 SMART Ubox_2 68 131 IPR003613 GO:0004842|GO:0016567
Prci161g0004 449 SUPERFAMILY ARM repeat 153 434 IPR016024 -
Prci161g0004 449 Gene3D - 138 443 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci161g0004 1 449 U-box Gene Family AT3G49810 75.278 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci161g0004 - - gmx:100779827 752.281