Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1612g0002 ATGCTGAAATCAGGGATGGGAATCGAGGAACGAAAGCAGGTGAAACGGCCTGCCCAGGCCAGCTCCAGAAAGGGCTGTATGCGTGGCAAGGGAGGCCCCGAGAACGCCAGCTGCACCTACAAAGGCGTTCGCCAGCGGACTTGGGGCAAATGGGTCGCCGAAATCCGCGAGCCCAATCGCGGTGCTCGTCTCTGGCTCGGCACTTTCGAGACCTCCCATGAAGCTGCTCTGGCCTACGACGCCGCTGCTCGCAAGCTCTACGGATCCGAGGCCAAGCTTAACCTCCCCGACCTCTCCCTCAATTCTCACCAGCCCGATCCGCCCCATTCCTCTGCTCCCTCCCTGCAGATTCCTCAAATGGTGCCCAATCACCGGCCTGTGCCGGATCATCAGCTGCTCCACCACCCGGCCGGCCATATTCCTCCCTGGTCTTTCAACGCCGTCCCCAACGATGCTCCGATGATCTCAGTGGCTTCTCAGCAAGTTGCACCGGTGTACAGCCCTAACTCTAGCTCCAGCTCCGGCTCCACCATGTCCGTTCCCTTCAGTGCCGGGGAGAGCGTGAAGGCCATTGAGAAGGAGGAGGATTTCGGTCAATTCTGGGGGACCGTCAACGGCCTTCCTGTCCCCGAGTTCGACGATTCCATCTGGGCCGAAGCTGCCATGTCTCTGGATTTTCCCGTGATGTCTGATGCGGGCATATATGCGACTGGCAATCTGGGAGATGTGGCTCCGTGGGACTCTCTGCAGACCCCCTGGTGCATGTGA 768 0.6016 MLKSGMGIEERKQVKRPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDAAARKLYGSEAKLNLPDLSLNSHQPDPPHSSAPSLQIPQMVPNHRPVPDHQLLHHPAGHIPPWSFNAVPNDAPMISVASQQVAPVYSPNSSSSSGSTMSVPFSAGESVKAIEKEEDFGQFWGTVNGLPVPEFDDSIWAEAAMSLDFPVMSDAGIYATGNLGDVAPWDSLQTPWCM 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1612g0002 255 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Prci1612g0002 255 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Prci1612g0002 255 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Prci1612g0002 255 MobiDBLite consensus disorder prediction 97 118 - -
Prci1612g0002 255 MobiDBLite consensus disorder prediction 1 17 - -
Prci1612g0002 255 MobiDBLite consensus disorder prediction 1 38 - -
Prci1612g0002 255 FunFam Ethylene-responsive transcription factor 2 38 97 - -
Prci1612g0002 255 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Prci1612g0002 255 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 13 179 - -
Prci1612g0002 255 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Prci1612g0002 255 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Prci1612g0002 255 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Prci1612g0002 255 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1612g0002 15 117 AP2-EREBP Transcription Factor Family AT1G75490 77.670 1.23e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci1612g0002 AP2 8.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1612g0002 - - gmx:100797850 299.671