Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g1003 ATGGTACAATCAAAGAAGTTCAGAGGAGTGAGGCAGCGCCAGTGGGGCTCTTGGGTGTCAGAAATTCGCCATCCTCTGCTAAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCAGAGGCAGCTGCGAGGGCATATGATCAAGCAGCCATTTTGATGAATGGTAGAAATGCAAAGACCAATTTCCCACCACCTTTGAATGAAGCTGAAGATGGTGGGTCTTTCTTGTCTCCCAAGGCTCTCTCTGAGCTGTTGTCCACAAAGCTTAAGAAATGCTGCAAGGACCCATCTCCATCCCTCACTTGTCTCAGGCTCGATTCTGATAATTCTCATATTGGTGTGTGGCAAAAGAGACCTGGACCGCGCTCTGATTCCAATTGGGTCATCAGGGTAGAGCTTGGCAAGAAACGAGCACAGCAAGATGATAAAACTGCTGCAGACGCCATTAGCAGTGAAGCTGCCAGCGAGGTGGAAGATGAAGAGGCAATGCAGATGATTGATGAGCTTCTTAATTGGAACTATCCTTGCGATTCCTCCAGTAGCCCTGAAGAAGAACAAAGATAA 564 0.4805 MVQSKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGRNAKTNFPPPLNEAEDGGSFLSPKALSELLSTKLKKCCKDPSPSLTCLRLDSDNSHIGVWQKRPGPRSDSNWVIRVELGKKRAQQDDKTAADAISSEAASEVEDEEAMQMIDELLNWNYPCDSSSSPEEEQR 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g1003 187 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Prci15g1003 187 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Prci15g1003 187 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Prci15g1003 187 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Prci15g1003 187 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Prci15g1003 187 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Prci15g1003 187 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Prci15g1003 187 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Prci15g1003 187 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 155 - -
Prci15g1003 187 MobiDBLite consensus disorder prediction 139 160 - -
Prci15g1003 187 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g1003 Prci-Chr15 6254939 6255925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g1003 1 179 AP2-EREBP Transcription Factor Family AT5G25390 63.441 5.60e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Prci15g1003 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g1003 - - lang:109326202 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g1003 15 6254939 6255925 Prci15g1003 15 6254939 6255925 ECH
Prci9g1299 9 26700429 26701736 Prci15g1003 15 6254939 6255925 ECH