Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0964 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCTATGATTACCTAGTTAAGAGGGATTTGAAGGCTTCTGCTGAGGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGATCCCGTTGCCATTGATGCCCCTGGAGGATTTCTGTTCGAGTGGTGGTCAGTATTCTGGGATATATTTATCGCCAGGACTAATGAGAAGCACTCAGAAGTTGCTGCATCTTATATCGAGACACAGTTAATTAAGGCAAGGGAACAGCATCAGCAGCAGCAACAGCAGCAGCCACAATCCCAGCATCATCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCACCAGCACATGCAGATGCAGCAAATCCTGTTTCAGAGGCAGCAGCAGCAGCCACCGTCACAACCACAGCAGCAGCAGCAGCAGCAGCCACCTCCGCAGCAGCAGCAGAGAAGGGATGGGACTCATCTCTTAAATGGCACTACAAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCCATGGCAACAAAGATGTATGAAGAGAGGTTAAAATCTCCCCTTCAGAGGGATTCTTTGGACGATGCAGCCTTGAAGCAAAGATTTGGTGACAACATGGGCCAGCTCTTGGACCCCAATCATGCCTCAATGATGAAGTCAGCTGCAGGTTCTGGCCAGCCTTCAGGACAACAAGTTTTGCATGGTGCTGCTGGTGGGATGCCTCAACAAGTTCAACCTCGTAGTCAACAATTGCCAGGGTCTACTCCAGATATAAAGAGTGAGATTAATCCTGTTTTGAATTCAAGAGCTGCAGGTCCTGAAGGATCATTAATAGGAATTCCTGGATCAAATCAAGGCAGCAATAATTTGACTCTGAAAGGATGGCCACTCACAGACTTGGATCAACTGCGCTCTGGTTTTGTTCATCAACAAAAGCCTTTTATACAGGCTCCTCAACCTCTTCATCAACTACAATTGTTGCCACCTCACCAGCAACAGCTTATACTTGCACAACAAAATTTGTCATCCCCATCTGCCAGTGATGAGAATAGAAAACTCAGAATGCTTCTGAATCAAAGGAGTATGGCCCCAAATAAGGACGGTCTTTCAAATCCTGTTGATGTGGTCTCAAATGTTGCATCACCTCTTCAAGCTGGTGGTTCTATTTTGCATCGTGGGGATACGGATATGCTAATGAAGTTTAAGTTGGCTCAGTTACAGCAACATCCACAGCAGCAGAGCAACAATCCACAGCAGCAGCAACTTCAACAGCATGTTCTATCAAATCAGCAACCTCAGACTTCAAACCATAATATGCATCAGCTAGATAAAGGGGGCGGCGGCGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTACAGGTCCTGCAAATAGTTCTGGAACAGCAAATACAGCAGGTCCATCTCCAAGCTCTGCACCCTCAACTCCTTCAACTCATACACCTGGAGATGTGATATCAATGCCTGCTTTGCCTCATAGTGGTAGTTCTTCAAAGCCTTTAATGATGTTTGGCACTGATGGTGCTGGAACTCTCACTTCGCCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATATGGATCGTTTTGTGGAGGATGGATCACTTGATGATAATGTTGAGTCTTTTTTATCACATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGAAGTAAATTCTGTACGAGCAAGCACAAGCAAAGTTATTTGCTGCCACTTTTCATCTGATGGGAAATTGCTTGCCAGTGGTGGCCATGACAAGAAGGCTGTGTTATGGCACACAGATACCCTAAAGCAAAAAGTTACTCTCGAAGAACATTCATCTATGATCACAGATGTCCGTTTCAGTCCAAGCATGCCACGTCTTGCAACATCTTCATTTGATAAAACTGTCAGGGTTTGGGATGTTGACAACCCTGGATATACAATTCGCACCTTTACAGGACATTCTACATCAGTTATGTCATTAGATTTTCACCCAAAGAAAGATGATCTGATCTGCTCATGTGATAGTGATGGTGAGATACGATTTTGGAGTATAACCAATGGTAGCTGTACTGGTGTCTCAAAGGGTGGCACTGCCCAGATGAGATTTCAGCCTCGTATGGGGAGGTACCTTGCTGCAGCTGCAGAGAATGTTGTCTCTATACTTGATGTGGAGACACAAACACGCAGATATTCGTTACAGGGACATACAAATCCAATACATTCTGTCTGCTGGGACCCTGCAGGCGAATTACTGGCTTCTGCGAGTGAGGACTCAGTTAGGGTTTGGACTATCGGGACAGGGAGTGAAGGAGAATGTGTTCATGAGCTAAGCTGCAACGGCAATAAGTTCCACTCCTGTGTTTTCCATCCAGCTTATTCTTCCTTGCTGGTCATTGGCTGTTACCAGTCTTTAGAGCTTTGGAATATGGCGGCGAACAAGACAATGACTCTATCTGCTCATGAAGGTCTCGTTGCTGCCTTGGCAGTGTCTCCAGTGACTGGCTTGGTTGCATCAGCTAGTCATGACAAATTCGTCAAGCTCTGGAAGTAA 2685 0.4562 MSQTNWEADKMLDVYIYDYLVKRDLKASAEAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQHQQQQQQQPQSQHHQQQQQQQQQQQQQHQHQHMQMQQILFQRQQQQPPSQPQQQQQQQPPPQQQQRRDGTHLLNGTTNGLVGNPSTANAMATKMYEERLKSPLQRDSLDDAALKQRFGDNMGQLLDPNHASMMKSAAGSGQPSGQQVLHGAAGGMPQQVQPRSQQLPGSTPDIKSEINPVLNSRAAGPEGSLIGIPGSNQGSNNLTLKGWPLTDLDQLRSGFVHQQKPFIQAPQPLHQLQLLPPHQQQLILAQQNLSSPSASDENRKLRMLLNQRSMAPNKDGLSNPVDVVSNVASPLQAGGSILHRGDTDMLMKFKLAQLQQHPQQQSNNPQQQQLQQHVLSNQQPQTSNHNMHQLDKGGGGGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSTGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFGTDGAGTLTSPSNQLWDDKDLELQADMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEVNSVRASTSKVICCHFSSDGKLLASGGHDKKAVLWHTDTLKQKVTLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYTIRTFTGHSTSVMSLDFHPKKDDLICSCDSDGEIRFWSITNGSCTGVSKGGTAQMRFQPRMGRYLAAAAENVVSILDVETQTRRYSLQGHTNPIHSVCWDPAGELLASASEDSVRVWTIGTGSEGECVHELSCNGNKFHSCVFHPAYSSLLVIGCYQSLELWNMAANKTMTLSAHEGLVAALAVSPVTGLVASASHDKFVKLWK 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0964 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 862 894 IPR001680 GO:0005515
Prci15g0964 894 MobiDBLite consensus disorder prediction 410 534 - -
Prci15g0964 894 Gene3D - 739 894 IPR015943 GO:0005515
Prci15g0964 894 Gene3D - 585 738 IPR015943 GO:0005515
Prci15g0964 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 695 737 IPR001680 GO:0005515
Prci15g0964 894 MobiDBLite consensus disorder prediction 410 445 - -
Prci15g0964 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 610 651 IPR001680 GO:0005515
Prci15g0964 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 862 894 - -
Prci15g0964 894 MobiDBLite consensus disorder prediction 222 259 - -
Prci15g0964 894 MobiDBLite consensus disorder prediction 456 516 - -
Prci15g0964 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 652 687 IPR001680 GO:0005515
Prci15g0964 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 652 687 - -
Prci15g0964 894 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Prci15g0964 894 Pfam LisH 10 36 IPR006594 GO:0005515
Prci15g0964 894 MobiDBLite consensus disorder prediction 89 175 - -
Prci15g0964 894 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 894 - -
Prci15g0964 894 SMART WD40_4 855 894 IPR001680 GO:0005515
Prci15g0964 894 SMART WD40_4 603 642 IPR001680 GO:0005515
Prci15g0964 894 SMART WD40_4 688 728 IPR001680 GO:0005515
Prci15g0964 894 SMART WD40_4 770 808 IPR001680 GO:0005515
Prci15g0964 894 SMART WD40_4 645 684 IPR001680 GO:0005515
Prci15g0964 894 SMART WD40_4 814 853 IPR001680 GO:0005515
Prci15g0964 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 777 809 - -
Prci15g0964 894 CDD WD40 606 894 - -
Prci15g0964 894 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 695 733 - -
Prci15g0964 894 SMART Lish 8 40 IPR006594 GO:0005515
Prci15g0964 894 ProSitePatterns Trp-Asp (WD) repeats signature. 671 685 IPR019775 -
Prci15g0964 894 ProSiteProfiles Trp-Asp (WD) repeats profile. 777 817 IPR001680 GO:0005515
Prci15g0964 894 FunFam Transcriptional corepressor LEUNIG 738 894 - -
Prci15g0964 894 SUPERFAMILY WD40 repeat-like 604 894 IPR036322 GO:0005515
Prci15g0964 894 Pfam WD domain, G-beta repeat 611 641 IPR001680 GO:0005515
Prci15g0964 894 Pfam WD domain, G-beta repeat 651 684 IPR001680 GO:0005515
Prci15g0964 894 Pfam WD domain, G-beta repeat 691 728 IPR001680 GO:0005515
Prci15g0964 894 Pfam WD domain, G-beta repeat 775 807 IPR001680 GO:0005515
Prci15g0964 894 Pfam WD domain, G-beta repeat 858 894 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0964 Prci-Chr15 6077508 6087860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0964 689 893 Miscellaneous Gene Families AT5G08390 25.714 1.66e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Prci15g0964 WD40 0.022 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0964 - - aip:107605121 1197.57