Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0963 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCTATGATTACCTAGTTAAGAGGGATTTGAAGGCTTCTGCTGAGGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGATCCCGTTGCCATTGATGCCCCTGGAGGATTTCTGTTCGAGTGGTGGTCAGTATTCTGGGATATATTTATCGCCAGGACTAATGAGAAGCACTCAGAAGTTGCTGCATCTTATATCGAGACACAGTTAATTAAGGCAAGGGAACAGCATCAGCAGCAGCAACAGCAGCAGCCACAATCCCAGCATCATCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCACCAGCACATGCAGATGCAGCAAATCCTGTTTCAGAGGCAGCAGCAGCAGCCACCGTCACAACCACAGCAGCAGCAGCAGCAGCAGCCACCTCCGCAGCAGCAGCAGAGAAGGGATGGGACTCATCTCTTAAATGGCACTACAAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCCATGGCAACAAAGATGTATGAAGAGAGGTTAAAATCTCCCCTTCAGAGGGATTCTTTGGACGATGCAGCCTTGAAGCAAAGATTTGGTGACAACATGGGCCAGCTCTTGGACCCCAATCATGCCTCAATGATGAAGTCAGCTGCAGGTTCTGGCCAGCCTTCAGGACAACAAGTTTTGCATGGTGCTGCTGGTGGGATGCCTCAACAAGTTCAACCTCGTAGTCAACAATTGCCAGGGTCTACTCCAGATATAAAGAGTGAGATTAATCCTGTTTTGAATTCAAGAGCTGCAGGTCCTGAAGGATCATTAATAGGAATTCCTGGATCAAATCAAGGCAGCAATAATTTGACTCTGAAAGGATGGCCACTCACAGACTTGGATCAACTGCGCTCTGGTTTTGTTCATCAACAAAAGCCTTTTATACAGGCTCCTCAACCTCTTCATCAACTACAATTGTTGCCACCTCACCAGCAACAGCTTATACTTGCACAACAAAATTTGTCATCCCCATCTGCCAGTGATGAGAATAGAAAACTCAGAATGCTTCTGAATCAAAGGAGTATGGCCCCAAATAAGGACGGTCTTTCAAATCCTGTTGATGTGGTCTCAAATGTTGCATCACCTCTTCAAGCTGGTGGTTCTATTTTGCATCGTGGGGATACGGATATGCTAATGAAGTTTAAGTTGGCTCAGTTACAGCAACATCCACAGCAGCAGAGCAACAATCCACAGCAGCAGCAACTTCAACAGCATGTTCTATCAAATCAGCAACCTCAGACTTCAAACCATAATATGCATCAGCTAGATAAAGGGGGCGGCGGCGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAACCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTACAGGTCCTGCAAATAGTTCTGGAACAGCAAATACAGCAGGTCCATCTCCAAGCTCTGCACCCTCAACTCCTTCAACTCATACACCTGGAGATGTGATATCAATGCCTGCTTTGCCTCATAGTGGTAGTTCTTCAAAGCCTTTAATGATGTTTGGCACTGATGGTGCTGGAACTCTCACTTCGCCTTCAAACCAGTTGGCTGATATGGATCGTTTTGTGGAGGATGGATCACTTGATGATAATGTTGAGTCTTTTTTATCACATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGAAGTAAATTCTGTACGAGCAAGCACAAGCAAAGTTATTTGCTGCCACTTTTCATCTGATGGGAAATTGCTTGCCAGTGGTGGCCATGACAAGAAGGCTGTGTTATGGCACACAGATACCCTAAAGCAAAAAGTTACTCTCGAAGAACATTCATCTATGATCACAGATGTCCGTTTCAGTCCAAGCATGCCACGTCTTGCAACATCTTCATTTGATAAAACTGTCAGGGTTTGGGATGTTGACAACCCTGGATATACAATTCGCACCTTTACAGGACATTCTACATCAGTTATGTCATTAGATTTTCACCCAAAGAAAGATGATCTGATCTGCTCATGTGATAGTGATGGTGAGATACGATTTTGGAGTATAACCAATGGTAGCTGTACTGGTGTCTCAAAGGGTGGCACTGCCCAGATGAGATTTCAGCCTCGTATGGGGAGGTACCTTGCTGCAGCTGCAGAGAATGTTGTCTCTATACTTGATGTGGAGACACAAACACGCAGATATTCGTTACAGGGACATACAAATCCAATACATTCTGTCTGCTGGGACCCTGCAGGCGAATTACTGGCTTCTGCGAGTGAGGACTCAGTTAGGGTTTGGACTATCGGGACAGGGAGTGAAGGAGAATGTGTTCATGAGCTAAGCTGCAACGGCAATAAGTTCCACTCCTGTGTTTTCCATCCAGCTTATTCTTCCTTGCTGGTCATTGGCTGTTACCAGTCTTTAGAGCTTTGGAATATGGCGGCGAACAAGACAATGACTCTATCTGCTCATGAAGGTCTCGTTGCTGCCTTGGCAGTGTCTCCAGTGACTGGCTTGGTTGCATCAGCTAGTCATGACAAATTCGTCAAGCTCTGGAAGTAA 2658 0.4567 MSQTNWEADKMLDVYIYDYLVKRDLKASAEAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQHQQQQQQQPQSQHHQQQQQQQQQQQQQHQHQHMQMQQILFQRQQQQPPSQPQQQQQQQPPPQQQQRRDGTHLLNGTTNGLVGNPSTANAMATKMYEERLKSPLQRDSLDDAALKQRFGDNMGQLLDPNHASMMKSAAGSGQPSGQQVLHGAAGGMPQQVQPRSQQLPGSTPDIKSEINPVLNSRAAGPEGSLIGIPGSNQGSNNLTLKGWPLTDLDQLRSGFVHQQKPFIQAPQPLHQLQLLPPHQQQLILAQQNLSSPSASDENRKLRMLLNQRSMAPNKDGLSNPVDVVSNVASPLQAGGSILHRGDTDMLMKFKLAQLQQHPQQQSNNPQQQQLQQHVLSNQQPQTSNHNMHQLDKGGGGGSVTMDGSMSNSFRGNDQVSKNQTGRKRKQPVSSTGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFGTDGAGTLTSPSNQLADMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEVNSVRASTSKVICCHFSSDGKLLASGGHDKKAVLWHTDTLKQKVTLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYTIRTFTGHSTSVMSLDFHPKKDDLICSCDSDGEIRFWSITNGSCTGVSKGGTAQMRFQPRMGRYLAAAAENVVSILDVETQTRRYSLQGHTNPIHSVCWDPAGELLASASEDSVRVWTIGTGSEGECVHELSCNGNKFHSCVFHPAYSSLLVIGCYQSLELWNMAANKTMTLSAHEGLVAALAVSPVTGLVASASHDKFVKLWK 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0963 885 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 768 800 - -
Prci15g0963 885 MobiDBLite consensus disorder prediction 410 534 - -
Prci15g0963 885 ProSitePatterns Trp-Asp (WD) repeats signature. 662 676 IPR019775 -
Prci15g0963 885 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 643 678 - -
Prci15g0963 885 MobiDBLite consensus disorder prediction 410 445 - -
Prci15g0963 885 MobiDBLite consensus disorder prediction 222 259 - -
Prci15g0963 885 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 686 724 - -
Prci15g0963 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 686 728 IPR001680 GO:0005515
Prci15g0963 885 MobiDBLite consensus disorder prediction 456 516 - -
Prci15g0963 885 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Prci15g0963 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 601 642 IPR001680 GO:0005515
Prci15g0963 885 Pfam LisH 10 36 IPR006594 GO:0005515
Prci15g0963 885 Gene3D - 729 885 IPR015943 GO:0005515
Prci15g0963 885 Gene3D - 580 728 IPR015943 GO:0005515
Prci15g0963 885 MobiDBLite consensus disorder prediction 89 175 - -
Prci15g0963 885 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 853 885 - -
Prci15g0963 885 Pfam WD domain, G-beta repeat 766 798 IPR001680 GO:0005515
Prci15g0963 885 Pfam WD domain, G-beta repeat 602 632 IPR001680 GO:0005515
Prci15g0963 885 Pfam WD domain, G-beta repeat 849 885 IPR001680 GO:0005515
Prci15g0963 885 Pfam WD domain, G-beta repeat 682 719 IPR001680 GO:0005515
Prci15g0963 885 Pfam WD domain, G-beta repeat 642 675 IPR001680 GO:0005515
Prci15g0963 885 SUPERFAMILY WD40 repeat-like 595 885 IPR036322 GO:0005515
Prci15g0963 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 853 885 IPR001680 GO:0005515
Prci15g0963 885 SMART Lish 8 40 IPR006594 GO:0005515
Prci15g0963 885 SMART WD40_4 679 719 IPR001680 GO:0005515
Prci15g0963 885 SMART WD40_4 761 799 IPR001680 GO:0005515
Prci15g0963 885 SMART WD40_4 805 844 IPR001680 GO:0005515
Prci15g0963 885 SMART WD40_4 636 675 IPR001680 GO:0005515
Prci15g0963 885 SMART WD40_4 846 885 IPR001680 GO:0005515
Prci15g0963 885 SMART WD40_4 594 633 IPR001680 GO:0005515
Prci15g0963 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 643 678 IPR001680 GO:0005515
Prci15g0963 885 CDD WD40 597 885 - -
Prci15g0963 885 FunFam Transcriptional corepressor LEUNIG 729 885 - -
Prci15g0963 885 ProSiteProfiles Trp-Asp (WD) repeats profile. 768 808 IPR001680 GO:0005515
Prci15g0963 885 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 885 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0963 Prci-Chr15 6077508 6087860 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0963 680 884 Miscellaneous Gene Families AT5G08390 25.714 1.30e-14 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Prci15g0963 WD40 0.021 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0963 - - cit:102608903 1170.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0963 15 6077508 6087860 Prci15g0963 15 6077508 6087860 ECH