Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0962 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCTATGATTACCTAGTTAAGAGGGATTTGAAGGCTTCTGCTGAGGCTTTTCAAGCTGAAGGAAAAGTATCCTCGGATCCCGTTGCCATTGATGCCCCTGGAGGATTTCTGTTCGAGTGGTGGTCAGTATTCTGGGATATATTTATCGCCAGGACTAATGAGAAGCACTCAGAAGTTGCTGCATCTTATATCGAGACACAGTTAATTAAGGCAAGGGAACAGCATCAGCAGCAGCAACAGCAGCAGCCACAATCCCAGCATCATCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCACCAGCACATGCAGATGCAGCAAATCCTGTTTCAGAGGCAGCAGCAGCAGCCACCGTCACAACCACAGCAGCAGCAGCAGCAGCAGCCACCTCCGCAGCAGCAGCAGAGAAGGGATGGGACTCATCTCTTAAATGGCACTACAAATGGGTTAGTTGGAAACCCTAGCACTGCAAATGCCATGGCAACAAAGATGTATGAAGAGAGGTTAAAATCTCCCCTTCAGAGGGATTCTTTGGACGATGCAGCCTTGAAGCAAAGATTTGGTGACAACATGGGCCAGCTCTTGGACCCCAATCATGCCTCAATGATGAAGTCAGCTGCAGGTTCTGGCCAGCCTTCAGGACAACAAGTTTTGCATGGTGCTGCTGGTGGGATGCCTCAACAAGTTCAACCTCGTAGTCAACAATTGCCAGGGTCTACTCCAGATATAAAGAGTGAGATTAATCCTGTTTTGAATTCAAGAGCTGCAGGTCCTGAAGGATCATTAATAGGAATTCCTGGATCAAATCAAGGCAGCAATAATTTGACTCTGAAAGGATGGCCACTCACAGACTTGGATCAACTGCGCTCTGGTTTTGTTCATCAACAAAAGCCTTTTATACAGGCTCCTCAACCTCTTCATCAACTACAATTGTTGCCACCTCACCAGCAACAGCTTATACTTGCACAACAAAATTTGTCATCCCCATCTGCCAGTGATGAGAATAGAAAACTCAGAATGCTTCTGAATCAAAGGAGTATGGCCCCAAATAAGGACGGTCTTTCAAATCCTGTTGATGTGGTCTCAAATGTTGCATCACCTCTTCAAGCTGGTGGTTCTATTTTGCATCGTGGGGATACGGATATGCTAATGAAGTTTAAGTTGGCTCAGTTACAGCAACATCCACAGCAGCAGAGCAACAATCCACAGCAGCAGCAACTTCAACAGCATGTTCTATCAAATCAGCAACCTCAGACTTCAAACCATAATATGCATCAGCTAGATAAAGGGGGCGGCGGCGGCAGTGTCACCATGGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGACTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTACAGGTCCTGCAAATAGTTCTGGAACAGCAAATACAGCAGGTCCATCTCCAAGCTCTGCACCCTCAACTCCTTCAACTCATACACCTGGAGATGTGATATCAATGCCTGCTTTGCCTCATAGTGGTAGTTCTTCAAAGCCTTTAATGATGTTTGGCACTGATGGTGCTGGAACTCTCACTTCGCCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATATGGATCGTTTTGTGGAGGATGGATCACTTGATGATAATGTTGAGTCTTTTTTATCACATGATGATACAGACCCTAGAGATACTGTTGGTCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGAAGTAAATTCTGTACGAGCAAGCACAAGCAAAGTTATTTGCTGCCACTTTTCATCTGATGGGAAATTGCTTGCCAGTGGTGGCCATGACAAGAAGGCTGTGTTATGGCACACAGATACCCTAAAGCAAAAAGTTACTCTCGAAGAACATTCATCTATGATCACAGATGTCCGTTTCAGTCCAAGCATGCCACGTCTTGCAACATCTTCATTTGATAAAACTGTCAGGGTTTGGGATGTTGACAACCCTGGATATACAATTCGCACCTTTACAGGACATTCTACATCAGTTATGTCATTAGATTTTCACCCAAAGAAAGATGATCTGATCTGCTCATGTGATAGTGATGGTGAGATACGATTTTGGAGTATAACCAATGGTAGCTGTACTGGTGTCTCAAAGGGTGGCACTGCCCAGATGAGATTTCAGCCTCGTATGGGGAGGTACCTTGCTGCAGCTGCAGAGAATGTTGTCTCTATACTTGATGTGGAGACACAAACACGCAGATATTCGTTACAGGGACATACAAATCCAATACATTCTGTCTGCTGGGACCCTGCAGGCGAATTACTGGCTTCTGCGAGTGAGGACTCAGTTAGGGTTTGGACTATCGGGACAGGGAGTGAAGGAGAATGTGTTCATGAGCTAAGCTGCAACGGCAATAAGTTCCACTCCTGTGTTTTCCATCCAGCTTATTCTTCCTTGCTGGTCATTGGCTGTTACCAGTCTTTAGAGCTTTGGAATATGGCGGCGAACAAGACAATGACTCTATCTGCTCATGAAGGTCTCGTTGCTGCCTTGGCAGTGTCTCCAGTGACTGGCTTGGTTGCATCAGCTAGTCATGACAAATTCGTCAAGCTCTGGAAGTAA 2670 0.4566 MSQTNWEADKMLDVYIYDYLVKRDLKASAEAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQHQQQQQQQPQSQHHQQQQQQQQQQQQQHQHQHMQMQQILFQRQQQQPPSQPQQQQQQQPPPQQQQRRDGTHLLNGTTNGLVGNPSTANAMATKMYEERLKSPLQRDSLDDAALKQRFGDNMGQLLDPNHASMMKSAAGSGQPSGQQVLHGAAGGMPQQVQPRSQQLPGSTPDIKSEINPVLNSRAAGPEGSLIGIPGSNQGSNNLTLKGWPLTDLDQLRSGFVHQQKPFIQAPQPLHQLQLLPPHQQQLILAQQNLSSPSASDENRKLRMLLNQRSMAPNKDGLSNPVDVVSNVASPLQAGGSILHRGDTDMLMKFKLAQLQQHPQQQSNNPQQQQLQQHVLSNQQPQTSNHNMHQLDKGGGGGSVTMDGSMSNSFRGNDQTGRKRKQPVSSTGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFGTDGAGTLTSPSNQLWDDKDLELQADMDRFVEDGSLDDNVESFLSHDDTDPRDTVGRCMDVSKGFTFSEVNSVRASTSKVICCHFSSDGKLLASGGHDKKAVLWHTDTLKQKVTLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYTIRTFTGHSTSVMSLDFHPKKDDLICSCDSDGEIRFWSITNGSCTGVSKGGTAQMRFQPRMGRYLAAAAENVVSILDVETQTRRYSLQGHTNPIHSVCWDPAGELLASASEDSVRVWTIGTGSEGECVHELSCNGNKFHSCVFHPAYSSLLVIGCYQSLELWNMAANKTMTLSAHEGLVAALAVSPVTGLVASASHDKFVKLWK 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0962 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 605 646 IPR001680 GO:0005515
Prci15g0962 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 647 682 IPR001680 GO:0005515
Prci15g0962 889 SUPERFAMILY WD40 repeat-like 599 889 IPR036322 GO:0005515
Prci15g0962 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 690 728 - -
Prci15g0962 889 MobiDBLite consensus disorder prediction 410 445 - -
Prci15g0962 889 CDD WD40 601 889 - -
Prci15g0962 889 MobiDBLite consensus disorder prediction 222 259 - -
Prci15g0962 889 MobiDBLite consensus disorder prediction 456 511 - -
Prci15g0962 889 SMART WD40_4 640 679 IPR001680 GO:0005515
Prci15g0962 889 SMART WD40_4 809 848 IPR001680 GO:0005515
Prci15g0962 889 SMART WD40_4 683 723 IPR001680 GO:0005515
Prci15g0962 889 SMART WD40_4 850 889 IPR001680 GO:0005515
Prci15g0962 889 SMART WD40_4 765 803 IPR001680 GO:0005515
Prci15g0962 889 SMART WD40_4 598 637 IPR001680 GO:0005515
Prci15g0962 889 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Prci15g0962 889 FunFam Transcriptional corepressor LEUNIG 733 889 - -
Prci15g0962 889 ProSitePatterns Trp-Asp (WD) repeats signature. 666 680 IPR019775 -
Prci15g0962 889 Gene3D - 734 889 IPR015943 GO:0005515
Prci15g0962 889 Gene3D - 580 733 IPR015943 GO:0005515
Prci15g0962 889 Pfam LisH 10 36 IPR006594 GO:0005515
Prci15g0962 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 857 889 IPR001680 GO:0005515
Prci15g0962 889 MobiDBLite consensus disorder prediction 89 175 - -
Prci15g0962 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 772 812 IPR001680 GO:0005515
Prci15g0962 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 647 682 - -
Prci15g0962 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 857 889 - -
Prci15g0962 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 772 804 - -
Prci15g0962 889 SMART Lish 8 40 IPR006594 GO:0005515
Prci15g0962 889 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 889 - -
Prci15g0962 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 690 732 IPR001680 GO:0005515
Prci15g0962 889 MobiDBLite consensus disorder prediction 410 528 - -
Prci15g0962 889 Pfam WD domain, G-beta repeat 853 889 IPR001680 GO:0005515
Prci15g0962 889 Pfam WD domain, G-beta repeat 606 636 IPR001680 GO:0005515
Prci15g0962 889 Pfam WD domain, G-beta repeat 686 723 IPR001680 GO:0005515
Prci15g0962 889 Pfam WD domain, G-beta repeat 770 802 IPR001680 GO:0005515
Prci15g0962 889 Pfam WD domain, G-beta repeat 646 679 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0962 Prci-Chr15 6077508 6087861 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0962 684 888 Miscellaneous Gene Families AT5G08390 25.714 1.65e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Prci15g0962 WD40 0.021 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0962 - - aip:107605121 1182.16