Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0953 ATGAACGTTCCCTCACCTAAACTATATCTTGAAGGTTTATACGACGCTTGCCCATTGTTGATGGAGCATTCTGGGCCCTTGAACGGCACTCAGTTCATTATTGACATAGCTGGGAGTAGTGAAGCCTCCACATCTACCTCGCCACATGATAGAAATTTAAATGGCGTTGGTACATCGCGCCGTGAAGACAGAGTTAGCAGTGTAAGAATACCTGCTTCTCTGCCTTCAGTTTCTGTTGCATCTAATGGTACAAATTCTAGGAATTCTTCAGTGTTAAGACGAGGGGATACCCGTCGGCACAGGAGTCCATTGAATTCAGGGTTATGGATATCTATTGAGCTAGTCCTCATAGTGAGCCAGATTGTTGCATCTATTATTGTTTTGTCTTTGTCGAGGCAAGAGCATCCACACACTCCATTGTTTGCTTGGATTATTGGTTATGCATCTGGATGTGTTGCTACAATCCCCTTCCTTGGTTGGAGGTATTATCATCATAACCACAGTAGAGAGCAAAATTCATCTCAGCCACGTCAAACTTCCCCTCGAGTTAATGTTTCTTCTAGGACACTTCTTTCTGTTTCAAGAACTAATGGGGGAGAAGACGATCAGGTTATTGTTTCATCCTCTAGAAGCAGTCAGGTTCCAGTAATGATGAATCCAAGACTGAAGTCGCTAGTGGAATATTTCAAAATGGCCTTAGATTGCTTTTTTGCTGTATGGTTCGTCATTGGCAATGTATGGATCTTTGGGGGGAACTCTTCTGCTAATGATGCTCCTAATATGTATAGGTTATGCATTGTGTTTCTGACATTCAGCTGTATTGGCTATGCTATGCCATTCATTCTATGTGCAACAATCTGCTGTTGTCTGCCTTGTATAATTTCCATCCTCGGAGTTAGAGAGGATCTGACACAAACAAGAGGGGCAACCTCTGAATCTATTAATGCCCTGCCAACATACAAGTTCAAGGTGAAGAAACGTAAAAACATTGACGAAAGCAACTCAAATGTGTTTGAAGGTGGAATTGTGGCTGCTGGAACGGAAAAGGAGCGTGTGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAACAACGATGAGCTGAGAGAGTTGCCATGTTCCCATCTTCTTCACAAAGAATGTGTAGACAAGTGGCTGAAGATTAATGCACTATGCCCTCTTTGTAAAGGTGAGGTTGGTGGGAACCTAGTAGGATCAGTCTCTGGTGAAGGTACCAACCAACAAAGGGGTGAGAGCAGAGTTGGAGTTAGTCCAATCAATAGCATAGTATAA 1308 0.4304 MNVPSPKLYLEGLYDACPLLMEHSGPLNGTQFIIDIAGSSEASTSTSPHDRNLNGVGTSRREDRVSSVRIPASLPSVSVASNGTNSRNSSVLRRGDTRRHRSPLNSGLWISIELVLIVSQIVASIIVLSLSRQEHPHTPLFAWIIGYASGCVATIPFLGWRYYHHNHSREQNSSQPRQTSPRVNVSSRTLLSVSRTNGGEDDQVIVSSSRSSQVPVMMNPRLKSLVEYFKMALDCFFAVWFVIGNVWIFGGNSSANDAPNMYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDLTQTRGATSESINALPTYKFKVKKRKNIDESNSNVFEGGIVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLLHKECVDKWLKINALCPLCKGEVGGNLVGSVSGEGTNQQRGESRVGVSPINSIV 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0953 435 FunFam E3 ubiquitin-protein ligase 343 409 - -
Prci15g0953 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 406 IPR013083 -
Prci15g0953 435 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 27 404 - -
Prci15g0953 435 MobiDBLite consensus disorder prediction 71 91 - -
Prci15g0953 435 MobiDBLite consensus disorder prediction 41 102 - -
Prci15g0953 435 ProSiteProfiles Zinc finger RING-type profile. 360 401 IPR001841 -
Prci15g0953 435 SUPERFAMILY RING/U-box 351 404 - -
Prci15g0953 435 MobiDBLite consensus disorder prediction 413 435 - -
Prci15g0953 435 SMART ring_2 360 400 IPR001841 -
Prci15g0953 435 Pfam Ring finger domain 360 401 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0953 Prci-Chr15 6013863 6023748 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0953 13 405 C3H Transcription Factor Family AT1G80400 52.513 1.58e-142 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0953 - - gmx:100778728 627.091