Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0952 ATGGAGCATTCTGGGCCCTTGAACGGCACTCAGTTCATTATTGACATAGCTGGGAGTAGTGAAGCCTCCACATCTACCTCGCCACATGATAGAAATTTAAATGGCGTTGGTACATCGCGCCGTGAAGACAGAGTTAGCAGTGTAAGAATACCTGCTTCTCTGCCTTCAGTTTCTGTTGCATCTAATGGTACAAATTCTAGGAATTCTTCAGTGTTAAGACGAGGGGATACCCGTCGGCACAGGAGTCCATTGAATTCAGGGTTATGGATATCTATTGAGCTAGTCCTCATAGTGAGCCAGATTGTTGCATCTATTATTGTTTTGTCTTTGTCGAGGCAAGAGCATCCACACACTCCATTGTTTGCTTGGATTATTGGTTATGCATCTGGATGTGTTGCTACAATCCCCTTCCTTGGTTGGAGGTATTATCATCATAACCACAGTAGAGAGCAAAATTCATCTCAGCCACGTCAAACTTCCCCTCGAGTTAATGTTTCTTCTAGGACACTTCTTTCTGTTTCAAGAACTAATGGGGGAGAAGACGATCAGGTTATTGTTTCATCCTCTAGAAGCAGTCAGGTTCCAGTAATGATGAATCCAAGCAGACTGAAGTCGCTAGTGGAATATTTCAAAATGGCCTTAGATTGCTTTTTTGCTGTATGGTTCGTCATTGGCAATGTATGGATCTTTGGGGGGAACTCTTCTGCTAATGATGCTCCTAATATGTATAGGTTATGCATTGTGTTTCTGACATTCAGCTGTATTGGCTATGCTATGCCATTCATTCTATGTGCAACAATCTGCTGTTGTCTGCCTTGTATAATTTCCATCCTCGGAGTTAGAGAGGATCTGACACAAACAAGAGGGGCAACCTCTGAATCTATTAATGCCCTGCCAACATACAAGTTCAAGGTGAAGAAACGTAAAAACATTGACGAAAGCAACTCAAATGTGTTTGAAGGTGGAATTGTGGCTGCTGGAACGGAAAAGGAGCGTGTGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAACAACGATGAGCTGAGAGAGTTGCCATGTTCCCATCTTCTTCACAAAGAATGTGTAGACAAGTGGCTGAAGATTAATGCACTATGCCCTCTTTGTAAAGGTGAGGTTGGTGGGAACCTAGTAGGATCAGTCTCTGGTGAAGGTACCAACCAACAAAGGGGTGAGAGCAGAGTTGGAGTTAGTCCAATCAATAGCATAGTATAA 1251 0.4317 MEHSGPLNGTQFIIDIAGSSEASTSTSPHDRNLNGVGTSRREDRVSSVRIPASLPSVSVASNGTNSRNSSVLRRGDTRRHRSPLNSGLWISIELVLIVSQIVASIIVLSLSRQEHPHTPLFAWIIGYASGCVATIPFLGWRYYHHNHSREQNSSQPRQTSPRVNVSSRTLLSVSRTNGGEDDQVIVSSSRSSQVPVMMNPSRLKSLVEYFKMALDCFFAVWFVIGNVWIFGGNSSANDAPNMYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDLTQTRGATSESINALPTYKFKVKKRKNIDESNSNVFEGGIVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLLHKECVDKWLKINALCPLCKGEVGGNLVGSVSGEGTNQQRGESRVGVSPINSIV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0952 416 FunFam E3 ubiquitin-protein ligase 324 390 - -
Prci15g0952 416 SUPERFAMILY RING/U-box 332 385 - -
Prci15g0952 416 MobiDBLite consensus disorder prediction 394 416 - -
Prci15g0952 416 MobiDBLite consensus disorder prediction 51 71 - -
Prci15g0952 416 MobiDBLite consensus disorder prediction 19 34 - -
Prci15g0952 416 MobiDBLite consensus disorder prediction 19 82 - -
Prci15g0952 416 Pfam Ring finger domain 341 382 IPR001841 -
Prci15g0952 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 387 IPR013083 -
Prci15g0952 416 ProSiteProfiles Zinc finger RING-type profile. 341 382 IPR001841 -
Prci15g0952 416 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 7 385 - -
Prci15g0952 416 SMART ring_2 341 381 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0952 Prci-Chr15 6013863 6023748 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0952 73 386 C3H Transcription Factor Family AT1G80400 59.561 3.47e-141 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0952 - - gmx:100778728 615.92