Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0950 ATGAACGTTCCCTCACCTAAACTATATCTTGAAGGTTTATACGACGCTTGCCCATTGTTGATGGAGCATTCTGGGCCCTTGAACGGCACTCAGTTCATTATTGACATAGCTGGGAGTAGTGAAGCCTCCACATCTACCTCGCCACATGATAGAAATTTAAATGGCGTTGGTACATCGCGCCGTGAAGACAGAGTTAGCAGTGTAAGAATACCTGCTTCTCTGCCTTCAGTTTCTGTTGCATCTAATGGTACAAATTCTAGGAATTCTTCAGTGTTAAGACGAGGGGATACCCGTCGGCACAGGAGTCCATTGAATTCAGGGTTATGGATATCTATTGAGCTAGTCCTCATAGTGAGCCAGATTGTTGCATCTATTATTGTTTTGTCTTTGTCGAGGCAAGAGCATCCACACACTCCATTGTTTGCTTGGATTATTGGTTATGCATCTGGATGTGTTGCTACAATCCCCTTCCTTGGTTGGAGGTATTATCATCATAACCACAGTAGAGAGCAAAATTCATCTCAGCCACGTCAAACTTCCCCTCGAGTTAATGTTTCTTCTAGGACACTTCTTTCTGTTTCAAGAACTAATGGGGGAGAAGACGATCAGGTTATTGTTTCATCCTCTAGAAGCAGTCAGGTTCCAGTAATGATGAATCCAAGCAGACTGAAGTCGCTAGTGGAATATTTCAAAATGGCCTTAGATTGCTTTTTTGCTGTATGGTTCGTCATTGGCAATGTATGGATCTTTGGGGGGAACTCTTCTGCTAATGATGCTCCTAATATGTATAGGTTATGCATTGTGTTTCTGACATTCAGCTGTATTGGCTATGCTATGCCATTCATTCTATGTGCAACAATCTGCTGTTGTCTGCCTTGTATAATTTCCATCCTCGGAGTTAGAGAGGATCTGACACAAACAAGAGGGGCAACCTCTGAATCTATTAATGCCCTGCCAACATACAAGTTCAAGGTGAAGAAACGTAAAAACATTGACGAAAGCAACTCAAATGTGTTTGAAGGTGGAATTGTGGCTGCTGGAACGGAAAAGGAGCGTGTGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAACAACGATGAGCTGAGAGAGTTGCCATGTTCCCATCTTCTTCACAAAGAATGTGTAGACAAGTGGCTGAAGATTAATGCACTATGCCCTCTTTGTAAAGGTGAGGTTGGTGGGAACCTAGTAGGATCAGTCTCTGGTGAAGGTACCAACCAACAAAGGGGTGAGAGCAGAGTTGGAGTTAGTCCAATCAATAGCATAGTATAA 1311 0.431 MNVPSPKLYLEGLYDACPLLMEHSGPLNGTQFIIDIAGSSEASTSTSPHDRNLNGVGTSRREDRVSSVRIPASLPSVSVASNGTNSRNSSVLRRGDTRRHRSPLNSGLWISIELVLIVSQIVASIIVLSLSRQEHPHTPLFAWIIGYASGCVATIPFLGWRYYHHNHSREQNSSQPRQTSPRVNVSSRTLLSVSRTNGGEDDQVIVSSSRSSQVPVMMNPSRLKSLVEYFKMALDCFFAVWFVIGNVWIFGGNSSANDAPNMYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDLTQTRGATSESINALPTYKFKVKKRKNIDESNSNVFEGGIVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLLHKECVDKWLKINALCPLCKGEVGGNLVGSVSGEGTNQQRGESRVGVSPINSIV 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0950 436 ProSiteProfiles Zinc finger RING-type profile. 361 402 IPR001841 -
Prci15g0950 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 407 IPR013083 -
Prci15g0950 436 MobiDBLite consensus disorder prediction 414 436 - -
Prci15g0950 436 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 27 405 - -
Prci15g0950 436 MobiDBLite consensus disorder prediction 71 91 - -
Prci15g0950 436 MobiDBLite consensus disorder prediction 41 102 - -
Prci15g0950 436 SMART ring_2 361 401 IPR001841 -
Prci15g0950 436 Pfam Ring finger domain 361 402 IPR001841 -
Prci15g0950 436 SUPERFAMILY RING/U-box 352 405 - -
Prci15g0950 436 FunFam E3 ubiquitin-protein ligase 344 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0950 Prci-Chr15 6013863 6023749 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0950 13 406 C3H Transcription Factor Family AT1G80400 52.381 3.99e-141 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0950 - - gmx:100778728 622.854