Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0948 ATGAACGTTCCCTCACCTAAACTATATCTTGAAGGTTTATACGACGCTTGCCCATTGTTGATGGAGCATTCTGGGCCCTTGAACGGCACTCAGTTCATTATTGACATAGCTGGGAGTAGTGAAGCCTCCACATCTACCTCGCCACATGATAGAAATTTAAATGGCGTTGGTACATCGCGCCGTGAAGACAGAGTTAGCAGTGTAAGAATACCTGCTTCTCTGCCTTCAGTTTCTGTTGCATCTAATGGTACAAATTCTAGGAATTCTTCAGTGTTAAGACGAGGGGATACCCGTCGGCACAGGAGTCCATTGAATTCAGGGTTATGGATATCTATTGAGCTAGTCCTCATAGTGAGCCAGATTGTTGCATCTATTATTGTTTTGTCTTTGTCGAGGCAAGAGCATCCACACACTCCATTGTTTGCTTGGATTATTGGTTATGCATCTGGATGTGTTGCTACAATCCCCTTCCTTGGTTGGAGGTATTATCATCATAACCACAGTAGAGAGCAAAATTCATCTCAGCCACGTCAAACTTCCCCTCGAGTTAATGTTTCTTCTAGGACACTTCTTTCTGTTTCAAGAACTAATGGGGGAGAAGACGATCAGGTTATTGTTTCATCCTCTAGAAGCAGTCAGGTTCCAGTAATGATGAATCCAAGGTTATGCATTGTGTTTCTGACATTCAGCTGTATTGGCTATGCTATGCCATTCATTCTATGTGCAACAATCTGCTGTTGTCTGCCTTGTATAATTTCCATCCTCGGAGTTAGAGAGGATCTGACACAAACAAGAGGGGCAACCTCTGAATCTATTAATGCCCTGCCAACATACAAGTTCAAGGTGAAGAAACGTAAAAACATTGACGAAAGCAACTCAAATGTGTTTGAAGGTGGAATTGTGGCTGCTGGAACGGAAAAGGAGCGTGTGATCTCTGGAGAAGATGCAGTTTGCTGCATCTGCCTGGCAAAGTATGAAAACAACGATGAGCTGAGAGAGTTGCCATGTTCCCATCTTCTTCACAAAGAATGTGTAGACAAGTGGCTGAAGATTAATGCACTATGCCCTCTTTGTAAAGGTGAGGTTGGTGGGAACCTAGTAGGATCAGTCTCTGGTGAAGGTACCAACCAACAAAGGGGTGAGAGCAGAGTTGGAGTTAGTCCAATCAATAGCATAGTATAA 1182 0.434 MNVPSPKLYLEGLYDACPLLMEHSGPLNGTQFIIDIAGSSEASTSTSPHDRNLNGVGTSRREDRVSSVRIPASLPSVSVASNGTNSRNSSVLRRGDTRRHRSPLNSGLWISIELVLIVSQIVASIIVLSLSRQEHPHTPLFAWIIGYASGCVATIPFLGWRYYHHNHSREQNSSQPRQTSPRVNVSSRTLLSVSRTNGGEDDQVIVSSSRSSQVPVMMNPRLCIVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDLTQTRGATSESINALPTYKFKVKKRKNIDESNSNVFEGGIVAAGTEKERVISGEDAVCCICLAKYENNDELRELPCSHLLHKECVDKWLKINALCPLCKGEVGGNLVGSVSGEGTNQQRGESRVGVSPINSIV 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0948 393 Pfam Ring finger domain 318 359 IPR001841 -
Prci15g0948 393 ProSiteProfiles Zinc finger RING-type profile. 318 359 IPR001841 -
Prci15g0948 393 MobiDBLite consensus disorder prediction 71 91 - -
Prci15g0948 393 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 220 362 - -
Prci15g0948 393 SUPERFAMILY RING/U-box 309 362 - -
Prci15g0948 393 MobiDBLite consensus disorder prediction 371 393 - -
Prci15g0948 393 MobiDBLite consensus disorder prediction 41 102 - -
Prci15g0948 393 SMART ring_2 318 358 IPR001841 -
Prci15g0948 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 364 IPR013083 -
Prci15g0948 393 FunFam E3 ubiquitin-protein ligase 301 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0948 Prci-Chr15 6013863 6023750 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0948 13 363 C3H Transcription Factor Family AT1G80400 44.975 1.29e-106 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0948 - - gmx:100778728 527.709