Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0901 ATGCCAGCTTTGACATGTAACGCTTGCAACAAAGAATTCAACGACGATGCAGAGCAAAAGCTTCATTACAAATCCGAGTGGCACCGATACAATCTCAAGCGCAAGGTGGCTGGTGTCCCTGGGGTGACAGAAGCACTGTTCCTGGCTAGACAATCTGCAGTTGCTAAGGATAAATCAAATGAAACCCCCATGCTCTATAGTTGTGGCCTTTGTGGAAAAAATTATAAAAGTTCTAAGGCTCATGCTGAGCATCTCAAGTCCCGTGGCCATTTGATGCGGGCATCTCAAGGAAGTAGTCATTCAGATGACAAGGCAATAGTCAAACCACTATCACAACGTGTAATGAATAGACCTCCTCCCAGAAGAGATGCAGACAATGATGAAAGTGAAGGAAGTGAAGATGAATGGGAGGAGGTTGATCCTGAGGATCCTTTGACTAATGATGCTTCAACGTCCATGAGTGGTTTGAATGTGAATGAGCATGATGACAATGTTGATATGGATGAAGATGATGATTATGGGGATTTGGATCCATCATGCTGTTTTATGTGTGATCAAAAGCATGATACTATAGAAAGTTGCATTGTTCACCTGCACAAGCAGCATGGATTCTTCATTCCAGATGTTGAGTATTTAAAGGATCCAAAAGGCCTGCTTACCTATCTAGGCCTTAAGGTCATGAGGGATTATATGTGTCTTTACTGCAATGATAGATGCCAGCCTTTCAGCAGCCTGGAAGCAGTTAGGAAGCACATGGCAGCCAAAAGTCACTGTAAAGTGCATTATGGTGATGGCGATGATGACGAGGAAGTGGAGTTGGAAGAATTCTATGATTATAGCAGCAGTTATGTGGATGAGCAAGGGAAGCAACTAGTTCCATCGGGTGATGCAGCCAACAATGTTGAACTGGGCCGCGGTGGATCAGAGCTTGTAATCACTAAGAAATCAAATGATGGAATATCAACTAAAACACTTGGTTCTCGTGAATTTTTGCGTTATTATCGTCAGAAACCCCGCCCATCATCCTCAAACAGCATCGCTGTTGCTGCTGCATTGGCTTCAAGTTACAGGAGCATGGGCTTGGCCACAGTGCAATCAAGGGAGCATATGGTGAGGTTGAAAGTGCTGAAGGAAATGAATAGGTCTGGTGTGGAAAGCATGCGTTCTAAAATAGGGATGAAAAGTAACGTCATCCGTAACTTGCCAAAGAATGTCCCATATTAG 1224 0.4379 MPALTCNACNKEFNDDAEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSAVAKDKSNETPMLYSCGLCGKNYKSSKAHAEHLKSRGHLMRASQGSSHSDDKAIVKPLSQRVMNRPPPRRDADNDESEGSEDEWEEVDPEDPLTNDASTSMSGLNVNEHDDNVDMDEDDDYGDLDPSCCFMCDQKHDTIESCIVHLHKQHGFFIPDVEYLKDPKGLLTYLGLKVMRDYMCLYCNDRCQPFSSLEAVRKHMAAKSHCKVHYGDGDDDEEVELEEFYDYSSSYVDEQGKQLVPSGDAANNVELGRGGSELVITKKSNDGISTKTLGSREFLRYYRQKPRPSSSNSIAVAAALASSYRSMGLATVQSREHMVRLKVLKEMNRSGVESMRSKIGMKSNVIRNLPKNVPY 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0901 407 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Prci15g0901 407 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Prci15g0901 407 SUPERFAMILY beta-beta-alpha zinc fingers 168 238 IPR036236 -
Prci15g0901 407 MobiDBLite consensus disorder prediction 128 144 - -
Prci15g0901 407 Pfam C2H2 type zinc-finger (2 copies) 181 282 IPR041661 -
Prci15g0901 407 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Prci15g0901 407 MobiDBLite consensus disorder prediction 145 159 - -
Prci15g0901 407 SMART c2h2final6 230 257 IPR013087 -
Prci15g0901 407 SMART c2h2final6 66 90 IPR013087 -
Prci15g0901 407 SMART c2h2final6 4 28 IPR013087 -
Prci15g0901 407 SMART c2h2final6 179 202 IPR013087 -
Prci15g0901 407 MobiDBLite consensus disorder prediction 81 168 - -
Prci15g0901 407 PANTHER ZINC FINGER PROTEIN 622 3 406 IPR040025 -
Prci15g0901 407 ProSitePatterns Zinc finger C2H2 type domain signature. 68 90 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0901 1 407 C2H2 Transcription Factor Family AT4G31420 64.819 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci15g0901 zf-C2H2_2 3.8e-25 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0901 K14816 - qsa:O6P43_015595 627.091