Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0889 ATGGATAAATATTCTGGTAAAAGAGCTGTTGATAGGAATGTAGTCTCTAGAAAGGGGATGTCTCATGCATTCAGAAATGGTTCCTGTAGAACTTTCTCAGGAACTAGTAATCCTCAAAATCGTCAGTTGTGCAGCCGACTTAATTGCAGTAGCAAAATTCACTCTTCTATAGTTGCTGAGAATGGTTCCTGTAGGAAAGGCAAATCTTTGAGGCTTTCAACCCAATCCTCTTTAAGTGACAAGCAAGCAGTTGGAAGTTCATGTAGAACTTTCTCAGGAACTAGTAATCCTAGAAAGTCCCCTAAAGGGCCCCAGCAAACACTTTCCTCTAGGTTAGAGACAGATTCATCTGAAACTAGCAGCAGTCAGGATGAACCTGAAGCTTCAGTTTGCATCCCTCCATCAGCAACTTATCAAAGTCAGCTTCAAGCTGAACAGGGACATGCAGAGTCTGATCACGTGATGCTGACAGAAGTAGCAAGCACTAGTGGTGTTTCAAAAACTAGGTCACAGAGGAATATTCATCAACCTGGATTGTATGGTCAAGAAACTAAAAGCATTGGCTCAGTGACACGTGCCAGTACTAGCCGATATAATTCGAGGAACCTCAAGTGCAACTCGATAAATGATGTCAGCTCCACAGGTTGTTCATATTCAAATTCAACCATGAATCGACGGAAGGATACAATGAAGAGAAGAAATTGTGAAAGGGAAAGTGGTTCCACTGCCAGAGGGAAGGTGAGTGGGTCTTTATTGGAAGGACAGAATTCTGGTTGTGGAAGTGGTATATCTATTTCTGATCCAAGAAGATCAAGAAATATTCCTCCTCACAGGGACAACATTGCATCAGTTAGAACTCGAAGGTCTATAAGCAGTAATGCCCGGGAAAGGCTTCCAAGCCATGGCAATGCACACTCTATGCAGCCCAATGAATCCTCTGCTTTGATGCCACCTTTGCCTCATGAACTTGTTTTTCCACATCATTCTTCTTCTGAGTCTCCTTTAATTCGATCGAGCTCCCATAGTAGACCAGGTTCAAGCAATGGGCAGCCTGCATCTCCTGCAGAATTTGACATAACTTGTCCTCTAATAAATTGGAATGGACGATGGCACCAAAACAGTATTGCTGAGGTATTATTGGCACTTGAGAGAATTGAACAAGATGAAGAGTTGGCAGAGGAGGAAATTCATTTACTAGGGACAAACTTCCTCCTTAATGGACTATACTTGTATGATCAGCATAGAGACATGCGGATGGATATTGATAATATGTCATATGAGGAACTTTTAGCCCTGGAAGAAAGGATGGGTAATGTGAGCACAGCTTTAACAGAGGAAGCACTTTCAAAATGCCTTGAGAGAAGCATCTATCAGTCTACCCCTTCAGATGATGATGATGATGAGAGGAGCAATATTGCTAACGACGATATCAAATGCAGCATCTGCCAGGATGAATATGTTGTTGGAGATGAAGTGGGGAGGCTGCAATGTGAGCATGGATATCATGTGGCTTGCATACAACACTGGCTGCGCCTCAAGAATTGGTGCCCTATCTGCAAAGCATCAGCAGCACCTTCAAATTCAGCTGTTGCCTCTAATCGCTCCTGA 1608 0.4303 MDKYSGKRAVDRNVVSRKGMSHAFRNGSCRTFSGTSNPQNRQLCSRLNCSSKIHSSIVAENGSCRKGKSLRLSTQSSLSDKQAVGSSCRTFSGTSNPRKSPKGPQQTLSSRLETDSSETSSSQDEPEASVCIPPSATYQSQLQAEQGHAESDHVMLTEVASTSGVSKTRSQRNIHQPGLYGQETKSIGSVTRASTSRYNSRNLKCNSINDVSSTGCSYSNSTMNRRKDTMKRRNCERESGSTARGKVSGSLLEGQNSGCGSGISISDPRRSRNIPPHRDNIASVRTRRSISSNARERLPSHGNAHSMQPNESSALMPPLPHELVFPHHSSSESPLIRSSSHSRPGSSNGQPASPAEFDITCPLINWNGRWHQNSIAEVLLALERIEQDEELAEEEIHLLGTNFLLNGLYLYDQHRDMRMDIDNMSYEELLALEERMGNVSTALTEEALSKCLERSIYQSTPSDDDDDERSNIANDDIKCSICQDEYVVGDEVGRLQCEHGYHVACIQHWLRLKNWCPICKASAAPSNSAVASNRS 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0889 535 MobiDBLite consensus disorder prediction 219 354 - -
Prci15g0889 535 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 77 524 IPR045191 GO:0061630
Prci15g0889 535 Pfam Ring finger domain 478 520 IPR001841 -
Prci15g0889 535 MobiDBLite consensus disorder prediction 331 354 - -
Prci15g0889 535 ProSiteProfiles Zinc finger RING-type profile. 479 520 IPR001841 -
Prci15g0889 535 MobiDBLite consensus disorder prediction 160 196 - -
Prci15g0889 535 MobiDBLite consensus disorder prediction 271 294 - -
Prci15g0889 535 MobiDBLite consensus disorder prediction 295 313 - -
Prci15g0889 535 SUPERFAMILY RING/U-box 472 524 - -
Prci15g0889 535 MobiDBLite consensus disorder prediction 241 268 - -
Prci15g0889 535 MobiDBLite consensus disorder prediction 72 131 - -
Prci15g0889 535 Coils Coil 375 402 - -
Prci15g0889 535 MobiDBLite consensus disorder prediction 225 240 - -
Prci15g0889 535 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 463 533 IPR013083 -
Prci15g0889 535 FunFam E3 ubiquitin-protein ligase arkadia 440 525 - -
Prci15g0889 535 SMART ring_2 479 519 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0889 Prci-Chr15 5763143 5767722 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0889 367 523 C3H Transcription Factor Family AT2G15530 41.772 3.84e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0889 - - gmx:100819874 515.383