Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0879 ATGAAGCTAAGAAATGAGAATTTAGTTAGGTTTTACGACGATGGTAAACAGAAACTAGAGCTTTCCTTGGAAAAGCCATTGTCAGTATATAAGGTACACGCAGCCGTAAACTCTGAAGGCAAAATTGGGAGTGGTGATAAGAACAGAATTAACCCAAAAATCCCTTCTCTCGGAAAGTTTAAGGTATTCCCGGAAAACCATGAACCTTGGAAGAAGAGAATCCTTGATCCTGGAAGTGACATATATTTGCAGTGGAACCGGGTTTTCCTTTGTTCTTGCATTCTAGCTCTATTTGTTGACACTCTGTTTTTTTACCTGCCCTCGGTGGCAAATGAGGAAAAGTCACCTTGTATGGCTACTGATTTGAATATTGGAATTGTAGTGACATGTTTCCGAACATTGGCTGATATTTTCTATCTGCTTAACATGCTCATAAAGTTCAGAACAGCTTATGTATCACCAAGTTCAAGGGTTTTTGGGAGGGGCGAGTTAGTCATGGATCCGAGGCTGATAGCAAAACGGTATTTGAGGTCAAATTTCTTCATAGATCTTGTAGCTACACCACCTCTTCCTCAGATCATGATTTGGTTTATTATGCCTGCAATTAGAAGCTCTCATGCTGATCACACCAACAATGCTCTTGTACTGATTGTTCTGCTTCAATATGTTCCCAGATTATATTTGATTTTCCCCTTAAGTTCTCAGATTATCAAAGCCACTGGTGTAGTCACAAAGACGGCTTGGGCTGGAGCTGCTTATAATCTTTTACTTTACATGCTAGCTAGCCATGTGTTGGGAGCATCATGGTACTTGTTGTCAATTGAAAGGAATGCTACATGTTGGATATGACAATGCAAAAATGAAACTCTCCCCATAAAATGTGTTCTTCAATACTTGGATTGCAGTACTTTAAACGATGATGATCGTATGAAGTGGGTAAACACTACTTCATTGTTTGATAACTGCAATCCAAATAACGACATCAGTTTCAAGTATGGCATTTTTGGACCTGCAGTTGAAAGCAATGTTGTTTCCTCACAGTTTGTAGAAAAATATCTCTATTGTCTGTGGTGGGGCTTGCAAAACTTGAGTTCCTATGGCCAGAATTTGAGTACAAGCACATTCATTTGGGAAACCACATTTGCAATACTTATAGCTATTATGGGTCTAGTTTTGTTTGCTCACTTAATTGGAAACATGCAGACATATCTGCAATCTATTGCAGTAAGGCTTGAGGAATGGAGACTCAAACGACACGATACCGAAGAATGGATGAGACATCGTCAACTCCCACAAAATCTAAGAGAACGAGTTAGAAGATTTGTTCAATACAAGTGGCTTGCAACTCGAGGAGTTGATGAAGAAGCTATCTTGCGAGGCCTTCCCATAGACTTGCGTAGAGATATCCAACGCCACCTTTGCTTAGACCTTGTTCGACGTGTCCCTTTTTTCTCAGAAATGGATGATCAGTTACTTGATGCAATATGTGAGAGATTGGTATCATCCTTGAGTACTCAAGGCACTTGCATTGTCCGAGAAGGAGATCCAGTCACAGAAATGTTTTTCATAATAAGAGGAAGACTTGAAAGCTCGACTACAAATGGAGGCAGAACAGGTTTCTTCAACTCTATTACATTGAGACCAGGTGATTTTTGTGGAGAAGAGTTGCTAGCATGGGCATTGCTTCCAAAATCTACTTCCAATTTGCCTTCTTCTACAAGAACAGTGAAAGCCCTCGTGGAAGTGGAAGCCTTTGCCCTGAGAGCTGAAGATCTCAAATTTGTTGCCAATCAGTTTCGCCGTCTTCACAGCAAGAAGTTGCAGCATACCTTCCGTTTCTACTCTTACCACTGGAGAACATGGGCTGTATGCTTCATTCAAGCTGTTTGGAGAAGGTACAAGAAGAGAATGCTAGCGGCCAGCCTTAGTTTGAAGGAATGCCGCTCATTCACTTACTGTGATGAACAGATTAGTGGTGTGGTGAAACATGATGAGGAGGACCCTCATGCTGTGACTTCATGTGCTAATTCATTAGGTGTCACTATACTTGCCTCAAAATTTGCTGCAAATGCAAGGAGAGGAGCTCAGAAGATCAAGGATCTTGAGATGCCTAAGTTGCAAAAGCCTGAAGAGCCTGATTTCTCAGAGGAAGCAGAGGATGATTAA 2166 0.4109 MKLRNENLVRFYDDGKQKLELSLEKPLSVYKVHAAVNSEGKIGSGDKNRINPKIPSLGKFKVFPENHEPWKKRILDPGSDIYLQWNRVFLCSCILALFVDTLFFYLPSVANEEKSPCMATDLNIGIVVTCFRTLADIFYLLNMLIKFRTAYVSPSSRVFGRGELVMDPRLIAKRYLRSNFFIDLVATPPLPQIMIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERNATCWIXQCKNETLPIKCVLQYLDCSTLNDDDRMKWVNTTSLFDNCNPNNDISFKYGIFGPAVESNVVSSQFVEKYLYCLWWGLQNLSSYGQNLSTSTFIWETTFAILIAIMGLVLFAHLIGNMQTYLQSIAVRLEEWRLKRHDTEEWMRHRQLPQNLRERVRRFVQYKWLATRGVDEEAILRGLPIDLRRDIQRHLCLDLVRRVPFFSEMDDQLLDAICERLVSSLSTQGTCIVREGDPVTEMFFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTSNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSYHWRTWAVCFIQAVWRRYKKRMLAASLSLKECRSFTYCDEQISGVVKHDEEDPHAVTSCANSLGVTILASKFAANARRGAQKIKDLEMPKLQKPEEPDFSEEAEDD 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0879 721 Gene3D Jelly Rolls 481 601 IPR014710 -
Prci15g0879 721 FunFam Cyclic nucleotide-gated ion channel 1 410 474 - -
Prci15g0879 721 FunFam Cyclic nucleotide-gated ion channel 1 481 599 - -
Prci15g0879 721 SMART cnmp_10 483 614 IPR000595 -
Prci15g0879 721 MobiDBLite consensus disorder prediction 699 721 - -
Prci15g0879 721 CDD CAP_ED 483 614 IPR000595 -
Prci15g0879 721 ProSiteProfiles cAMP/cGMP binding motif profile. 483 567 IPR000595 -
Prci15g0879 721 Pfam Ion transport protein 85 410 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Prci15g0879 721 SUPERFAMILY Voltage-gated potassium channels 77 405 - -
Prci15g0879 721 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 66 714 - -
Prci15g0879 721 Gene3D - 87 409 - -
Prci15g0879 721 SUPERFAMILY cAMP-binding domain-like 413 605 IPR018490 -
Prci15g0879 721 Pfam Cyclic nucleotide-binding domain 506 594 IPR000595 -
Prci15g0879 721 Gene3D Helix hairpin bin 411 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0879 Prci-Chr15 5676659 5681934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0879 10 715 Ion Channels AT2G24610 69.499 0.0 1021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0879 K05391 - gmx:100803334 1206.43