Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0825 ATGAGCAAGTGTTTGGCAGTGTTGATTATGATTCTTTCATTGTTGCTGGATGTGCAATCCCAAGGAACCCCAGAGAGCATGCAAGATATGCCTCAAACCATTCACCCCAGTAAAGGGATTATAATAGCGATCCTCACCGTGATGTTTGGCATATCTTTTCTGCTTCTGGCTTATGTAAAGTTCTGTAAAAGCCGTTCGACCGAGTCTCTGAACCGAGATATGACCATTCCAGGATTAAGTCGATCAGGGTCGAGATATTCCGGGATAGACAAGCAAGTGATCGAAGCACTGCCCTTTTTCAAGTTCTCTTCACTCAAGGGGTCAAAAGAAGGCCTAGAATGCGCCGTTTGCCTGTCCAAGTTCGACGACGCCGAGGTTCTTAGGTTGCTGCCCAAGTGTAAGCATGCTTTCCACATGAATTGCATCGACAAGTGGCTCGAATGCCACTCGACCTGCCCTCTTTGTAGGTACAAGGTTGACCCTGGTGACATCAAGACCTTCAATTCCTCCATCAGCTCCAGGTTCCTTCGAGTTCCTTCCGACATCACAGAGGTCCCCGATCTTGAAATCTTCGTCCAGAGGGAGCAATCAAGCCAGGGCTCTTCCATATTTGACAACTGGAAACCTGCGCACAGGCTCAATCACAAAATAGTCATATCCGATGTTGCCACCAGAAGCAGGTGGAGTGATCTTAATTCCTCGGACTTGCTGTCGTTGAATTCTGAGATCCTCAGTGCCATGTCGAGCGCCACATTCTCCGCTTCCAACGAGGAAGACAACTCGTTCACGCTGCTTAACGCTCCAGGGGAGAAGAGATCCATGTCGGAGATTGCCAACGTGGCGAGATTTGCAGAGATCAGCGTGCACGACGATGTGAGGGAAGAGAGAGTGAGGAGGATTTGGTTGCCGATTGTGGAGCGAACACTGCACTGGTTTGCGGGACGAGAGAGCAACACGAGAGAGTCGGAACACAAAGGATTTGCTTCAAATGTTTGA 996 0.492 MSKCLAVLIMILSLLLDVQSQGTPESMQDMPQTIHPSKGIIIAILTVMFGISFLLLAYVKFCKSRSTESLNRDMTIPGLSRSGSRYSGIDKQVIEALPFFKFSSLKGSKEGLECAVCLSKFDDAEVLRLLPKCKHAFHMNCIDKWLECHSTCPLCRYKVDPGDIKTFNSSISSRFLRVPSDITEVPDLEIFVQREQSSQGSSIFDNWKPAHRLNHKIVISDVATRSRWSDLNSSDLLSLNSEILSAMSSATFSASNEEDNSFTLLNAPGEKRSMSEIANVARFAEISVHDDVREERVRRIWLPIVERTLHWFAGRESNTRESEHKGFASNV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0825 331 SUPERFAMILY RING/U-box 93 161 - -
Prci15g0825 331 Pfam Ring finger domain 113 156 IPR001841 -
Prci15g0825 331 CDD RING-H2_EL5-like 113 156 - -
Prci15g0825 331 SMART ring_2 114 155 IPR001841 -
Prci15g0825 331 FunFam RING-H2 finger protein ATL43 89 163 - -
Prci15g0825 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 162 IPR013083 -
Prci15g0825 331 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Prci15g0825 331 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 24 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0825 Prci-Chr15 5275670 5277429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0825 24 316 C3H Transcription Factor Family AT2G20030 39.489 1.21e-73 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0825 K10664 - gmx:100816668 344.739