Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0801 ATGGAAGCTCCCGACTTCTTCCAGACTCCCAACAACATGCCCGCTGCCGACTCCTTTGTCGTTGAGGACCTCCTCGACTTCCCCAACGACGATGAACCTCTCCTCCTCGATGACGTTTCCGCCCTCCATTCCCTTCCCGGCAAATCTGCCAATTCTTCCACCGTCGCTACCGTTGATGCTTCCCCTGTCTCCCACCCCAATGTCGTCGGCGATATTGGCTGCCGCAGTTTCCATGACCTGCATTTACCTGGCGACCTCTGCGTCCCCGTGCCGTATGATGATATGGCGGAGCTGGAATGGCTTTCGAATGTGGTGGAGGAATCATTTTCGAGCGAGGACCTGCAAAAGCTGCATCTGATATCAGGGATAAAAGCCCGAAACGATGTGGAAGCATCCGAAACTCATGAATTGCAGGCCGAAAACAACCGAAGTGTCAACAGCCCCATATTCAACTCTGAAGTCTCCGTTCCGGCCAAGGCTCGCAGCAAACGTTCACGTGGCTCTCCATGCAACTGGAACTCTCGCCTCCTCCTTCTTTCTCCATCTCCATCTGCATCACCATCTCCATCCTCCACATCATCTTCCTCAGACCCCGACGTCGTCCTTTCCACCGGGAAGAAACCAGGAAAGTCCGCTCCAAGGAGAAAGGACAGTGGTGGCGAGGGGCGCAAGTGCCTGCATTGTGCTACAGATAAGACACCGCAATGGCGGACAGGACCCATGGGTCCCAAGACACTTTGCAATGCCTGTGGGGTGAGGTACAAGTCAGGCCGGCTAGTGCCAGAGTACCGGCCGGCAGCGAGTCCGACTTTTGTGCTGACAAAGCATTCAAACTCACACCGGAAGGTGATGGAGCTTCGTCGGCAGAAGGAGATGCAGCAGCAGCAACACCATCAGGTTCTGCAACATCCCAACATGATGTTCGAGTTTCATGTGTCCAATGGGGACGATTACTTGATCCACCAACACCTCGGCCCTGACTTCAGACAGCTCATTTAG 999 0.5465 MEAPDFFQTPNNMPAADSFVVEDLLDFPNDDEPLLLDDVSALHSLPGKSANSSTVATVDASPVSHPNVVGDIGCRSFHDLHLPGDLCVPVPYDDMAELEWLSNVVEESFSSEDLQKLHLISGIKARNDVEASETHELQAENNRSVNSPIFNSEVSVPAKARSKRSRGSPCNWNSRLLLLSPSPSASPSPSSTSSSSDPDVVLSTGKKPGKSAPRRKDSGGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKEMQQQQHHQVLQHPNMMFEFHVSNGDDYLIHQHLGPDFRQLI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0801 332 MobiDBLite consensus disorder prediction 210 226 - -
Prci15g0801 332 MobiDBLite consensus disorder prediction 181 226 - -
Prci15g0801 332 Gene3D - 220 303 IPR013088 GO:0006355|GO:0008270
Prci15g0801 332 PANTHER GATA TRANSCRIPTION FACTOR 13 298 - -
Prci15g0801 332 ProSiteProfiles GATA-type zinc finger domain profile. 219 255 IPR000679 GO:0006355|GO:0043565
Prci15g0801 332 ProSitePatterns GATA-type zinc finger domain. 225 250 IPR000679 GO:0006355|GO:0043565
Prci15g0801 332 FunFam GATA transcription factor 214 300 - -
Prci15g0801 332 CDD ZnF_GATA 224 271 IPR000679 GO:0006355|GO:0043565
Prci15g0801 332 SMART GATA_3 219 269 IPR000679 GO:0006355|GO:0043565
Prci15g0801 332 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 220 283 - -
Prci15g0801 332 MobiDBLite consensus disorder prediction 131 150 - -
Prci15g0801 332 MobiDBLite consensus disorder prediction 181 201 - -
Prci15g0801 332 PIRSF Txn_fac_GATA_plant 1 314 IPR016679 GO:0003677|GO:0005634|GO:0045893
Prci15g0801 332 Pfam GATA zinc finger 225 258 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0801 Prci-Chr15 5155498 5157286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0801 2 332 C2C2-Gata Transcription Factor Family AT5G25830 50.992 1.26e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci15g0801 GATA 3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0801 - - qsa:O6P43_015488 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0801 15 5155498 5157286 Prci15g0801 15 5155498 5157286 ECH