Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0742 ATGTCAACACCGCTGCTCGGCAGAGGGGAGGACAAAGGTCAAAGCAATGTCAATTTATTGGCCTCCTCAACTACCATGGAAAGTGTTTGCCTCATCAGCTCCAAATTGAAAGAACGCGACTACATGGGATTATCTGATTGTTCTTCAGTGGACAGCTCAGATCAGTCCTTCTCGAATGAGAGTAAAACTAGGCTGAACCTAAAAGCAACAGAGCTGAGGCTTGGGCTTCCGGGATCTCAGTCTCCTGAAAGAGAGGACTCAGATAATCGCTGCTTTGAAAGTTCAACTCAATTTGATGAGAAACCTCTTTTTCCCTTGCACCCTTCAACGGATGATCAACACCGCTCGTCAAAGAATGCCATTTTGGGTAACAAAAGAGGATTCTCAGAAGCTATGAATGAGTTCTCCAAGGGGAATTTCCTGGCAAATTCGGAGGGGAATACAATTTTGTCACCCAGAACTTCTCCTAATTTAGGATTGAAAACTAGTTATATGCTTGATAAAGCGAAAGAAGCAGCACCAACAAAGGTGGAACCAGAGAGTCCCCATGTTGTGAATGAAACCAGACCAAATCATAATGGTTCTGCAAATAAAAACAACGGTGCACCTGCTACTAAGGCACAGGTTGTGGGTTGGCCTCCTATACGATCACAAAGAAAAATTTTATTGGCTACTACTGCAAAGAACGCTGAAGAAGTAGATGGAAAAGCACTGTTTATTAAGGTCAGCATGGATGGTGCTCCATATTTAAGGAAAGTAGACTTGAAGAATTACAGTGCATATCCAGAACTATCTTCTTCTCTGGAGAAGATGTTCAGTTGCTTTACCATAGGTCAATGTGGATCCAACGGAACTTTGGGTAGCGGGATGCTGAATGAAAGCAAGATGAGGGATCTGCTTCGAGGGTCTGAATTTGTTCTTACTTATGAGGACAGAGAAGGTGACTGGATGCTTGTGGGTGATGTTCCCTGGGAGATGTTTGTTGAAACATGCAGGAGGATGAGGATCATGAAGAGTTCTGAAGCTATTGGTTTAGCTCCCAGAAAGAAATAA 1053 0.433 MSTPLLGRGEDKGQSNVNLLASSTTMESVCLISSKLKERDYMGLSDCSSVDSSDQSFSNESKTRLNLKATELRLGLPGSQSPEREDSDNRCFESSTQFDEKPLFPLHPSTDDQHRSSKNAILGNKRGFSEAMNEFSKGNFLANSEGNTILSPRTSPNLGLKTSYMLDKAKEAAPTKVEPESPHVVNETRPNHNGSANKNNGAPATKAQVVGWPPIRSQRKILLATTAKNAEEVDGKALFIKVSMDGAPYLRKVDLKNYSAYPELSSSLEKMFSCFTIGQCGSNGTLGSGMLNESKMRDLLRGSEFVLTYEDREGDWMLVGDVPWEMFVETCRRMRIMKSSEAIGLAPRKK 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0742 350 ProSiteProfiles PB1 domain profile. 237 339 IPR000270 GO:0005515
Prci15g0742 350 Gene3D - 231 349 - -
Prci15g0742 350 MobiDBLite consensus disorder prediction 75 117 - -
Prci15g0742 350 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 64 344 IPR003311 GO:0005634|GO:0006355
Prci15g0742 350 Pfam AUX/IAA family 70 348 IPR033389 -
Prci15g0742 350 MobiDBLite consensus disorder prediction 173 210 - -
Prci15g0742 350 FunFam Auxin-responsive protein 232 349 - -
Prci15g0742 350 SUPERFAMILY CAD & PB1 domains 233 338 - -
Prci15g0742 350 MobiDBLite consensus disorder prediction 186 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0742 Prci-Chr15 4806069 4809703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0742 251 342 B3 DNA Binding Superfamily AT1G19220 33.696 8.94e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Prci15g0742 AUX_IAA 3e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0742 K14484 - gmx:100815447 474.937