Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0731 ATGGGGAGAGGGAAGATCGTGATAAGGAGAATCGACAATTCGACGAGCAGGCAGGTGACATTCTCGAAGCGAAGGAATGGTTTGCTGAAGAAGGCGAAGGAGTTAGCGATACTGTGCGACGCCGAGGTTGGAGTAATCGTCTTCTCCAGCACTGGTAAACTCTACGACTTCGCCAACACCAGTATGAAAGCAGTGATTGATCGATTCAACCAAACTAAAGAAGATCAACATCCTCACCTTGGGAGCTCAACGTCAGAAGTGAAGTTTTGGCAGAGGGAGGCAGCAATGTTAAGGCAACAATTGCAGAACTTACAAGAAAATCACCGGCAAATGATGGGAGAAGAGCTTTCAAGTTTGACTGTAAAAGAATTACAGGGTTTGGAAAGCCAAATTGAAATTAGCCTTCAGGGTGTCCGTATGAAAAAGGACCAACTTTTAATGAATGAAATACAGGAACTAAACCGAAAGGGTAGCCTTATACACCAAGAAAATGTGGAGCTTTATAAGAAGGCCTATGAAACAAGATACGGGAACACAACAAACAGAAATTCGGCTCTTCAAAATGGTCTAGGCATAGGAGAGGACTTGCAGGTTCCTGTAAATCTCCGACTCAACCAGCCAGAGCAATAA 630 0.4413 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIVFSSTGKLYDFANTSMKAVIDRFNQTKEDQHPHLGSSTSEVKFWQREAAMLRQQLQNLQENHRQMMGEELSSLTVKELQGLESQIEISLQGVRMKKDQLLMNEIQELNRKGSLIHQENVELYKKAYETRYGNTTNRNSALQNGLGIGEDLQVPVNLRLNQPEQ 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0731 209 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci15g0731 209 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci15g0731 209 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Prci15g0731 209 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Prci15g0731 209 Coils Coil 87 114 - -
Prci15g0731 209 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci15g0731 209 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci15g0731 209 ProSiteProfiles K-box domain profile. 87 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci15g0731 209 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 163 - -
Prci15g0731 209 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Prci15g0731 209 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci15g0731 209 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci15g0731 209 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci15g0731 209 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci15g0731 209 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0731 Prci-Chr15 4699332 4712423 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0731 1 209 MADS-box Gene Family AT4G37940 63.158 6.16e-88 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci15g0731 K-box 2.5e-27 No_clan