Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0730 ATGGGGAGAGGGAAGATCGTGATAAGGAGAATCGACAATTCGACGAGCAGGCAGGTGACATTCTCGAAGCGAAGGAATGGTTTGCTGAAGAAGGCGAAGGAGTTAGCGATACTGTGCGACGCCGAGGTTGGAGTAATCGTCTTCTCCAGCACTGGTAAACTCTACGACTTCGCCAACACCAGTATGAAAGCAGTGATTGATCGATTCAACCAAACTAAAGAAGATCAACATCCTCACCTTGGGAGCTCAACGTCAGAAGTGAAGAGGGAGGCAGCAATGTTAAGGCAACAATTGCAGAACTTACAAGAAAATCACCGGCAAATGATGGGAGAAGAGCTTTCAAGTTTGACTGTAAAAGAATTACAGGGTTTGGAAAGCCAAATTGAAATTAGCCTTCAGGGTGTCCGTATGAAAAAGGACCAACTTTTAATGAATGAAATACAGGAACTAAACCGAAAGGGTAGCCTTATACACCAAGAAAATGTGGAGCTTTATAAGAAGGCCTATGAAACAAGATACGGGAACACAACAAACAGAAATTCGGCTCTTCAAAATGGTCTAGGCATAGGAGAGGACTTGCAGGTTCCTGTAAATCTCCGACTCAACCAGCCAGAGCAATAA 621 0.4412 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIVFSSTGKLYDFANTSMKAVIDRFNQTKEDQHPHLGSSTSEVKREAAMLRQQLQNLQENHRQMMGEELSSLTVKELQGLESQIEISLQGVRMKKDQLLMNEIQELNRKGSLIHQENVELYKKAYETRYGNTTNRNSALQNGLGIGEDLQVPVNLRLNQPEQ 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0730 206 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Prci15g0730 206 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Prci15g0730 206 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci15g0730 206 Coils Coil 84 111 - -
Prci15g0730 206 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci15g0730 206 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci15g0730 206 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 160 - -
Prci15g0730 206 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Prci15g0730 206 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci15g0730 206 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci15g0730 206 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci15g0730 206 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci15g0730 206 Pfam K-box region 84 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci15g0730 206 ProSiteProfiles K-box domain profile. 84 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci15g0730 206 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0730 Prci-Chr15 4699331 4712423 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0730 1 206 MADS-box Gene Family AT4G37940 61.722 3.13e-82 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci15g0730 K-box 1.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0730 K09264 - gmx:100778970 319.701