Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0729 ATGGGGAGAGGGAAGATCGTGATAAGGAGAATCGACAATTCGACGAGCAGGCAGGTGACATTCTCGAAGCGAAGGAATGGTTTGCTGAAGAAGGCGAAGGAGTTAGCGATACTGTGCGACGCCGAGGTTGGAGTAATCGTCTTCTCCAGCACTGGTAAACTCTACGACTTCGCCAACACCAGTATGAAAGCAGTGATTGATCGATTCAACCAAACTAAAGAAGATCAACATCCTCACCTTGGGAGCTCAACGTCAGAAGTGAAGTTTTGGCAGAGGGAGGCAGCAATGTTAAGGCAACAATTGCAGAACTTACAAGAAAATCACCGGCAAATGATGGGAGAAGAGCTTTCAAGTTTGACTGTAAAAGAATTACAGGGTTTGGAAAGCCAAATTGAAATTAGCCTTCAGGGTGTCCGTATGAAAAAGGGTAGCCTTATACACCAAGAAAATGTGGAGCTTTATAAGAAGGCCTATGAAACAAGATACGGGAACACAACAAACAGAAATTCGGCTCTTCAAAATGGTCTAGGCATAGGAGAGGACTTGCAGGTTCCTGTAAATCTCCGACTCAACCAGCCAGAGCAATAA 588 0.449 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIVFSSTGKLYDFANTSMKAVIDRFNQTKEDQHPHLGSSTSEVKFWQREAAMLRQQLQNLQENHRQMMGEELSSLTVKELQGLESQIEISLQGVRMKKGSLIHQENVELYKKAYETRYGNTTNRNSALQNGLGIGEDLQVPVNLRLNQPEQ 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0729 195 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Prci15g0729 195 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Prci15g0729 195 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci15g0729 195 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Prci15g0729 195 Pfam K-box region 83 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci15g0729 195 Coils Coil 87 114 - -
Prci15g0729 195 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci15g0729 195 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci15g0729 195 ProSiteProfiles K-box domain profile. 87 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci15g0729 195 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci15g0729 195 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci15g0729 195 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci15g0729 195 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 156 - -
Prci15g0729 195 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Prci15g0729 195 FunFam MADS-box transcription factor MADS-MC 13 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0729 Prci-Chr15 4699331 4712423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0729 1 195 MADS-box Gene Family AT4G37940 61.244 1.11e-83 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci15g0729 K-box 1.6e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0729 K09264 - gmx:100778970 299.671