Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0725 ATGGATAATGGCATACTCCAAGTTACCTTATCAAACCCTGAGGGAATTGTTACTGGGATTCGATATAACGGTGTTGACAATTTGCTTGAGGTCCTTAACAAGGAGACTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATAAAAGGAACATGTTTTAAAGTTATAGTTCAAAACGAGGAACAGGTGGAGCTTTCATTCACACGAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTTCCCTTAAATATTGATAAAAGATTTATAATGCGCCGTGGTTCATCAGGCTTCTACTCTTATGCAATATATGAGCACTTAGCTGGATGGCCAGATTTTGACATTGGTGAAACGAGGATTACTTTCAAGCTGAGAAAAGACAAGTTCAATTACATGGCTATAGAAGACAATAGGCAAAGGATTATGCCTCTTCCAGATGATCGGTTACCAGGAAGATGCCAGCCCTTGGCCTACCCAGAAGCTGTCCTGCTAGTCAATCCCAAAAATCCACAACTCAAAGGCGAGGTGGATGACAAGTATCAATATTCATGTAAAAACATAGATAATCAAGTTCATGGGTGGATATCTTTCAACCCACCAGTGGGATTCTGGCAGATCACGCCCAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAGCAGAATTTGACCTCACATGTTGGCCCTACCACACTTGCTATGTTTCTTAGTTCACACTATGCTGGACAAGATTTAGATCCCAAATTTAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTCTTTATTTATCTCAACTCTGGATCAATTGGTGATGACACACTTTGGCTGTGGGAGGATGCTAAAATTCAGATGACAACTGAAGTCGAAAGTTGGCCATATTTTTTCCCAGCTTCAGAGGATTTTTTGAAGTCAGATCAACGGGGTAATGTTAGTGGTAGGCTACTTGTGTTAGACAGGTGCATCAGCTCAGATTTGATGCCAGCAAATGGTGCTTATGTTGGTCTTGCCCCACCAGGAGAGGCAGGGTCTTGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTGCCATTAAGAATGTACGTCCAGGGGACTACAACCTTTATGCTTGGGTCCCTGGTTTTGTCGGAGACTACAGATTTGATGATCCGATGAAGATAGATTCAGGTTCCTATATCGAAGTGGGTGAAATTGTGTATGAGGCCCCAAGAGATGGACCCACGTTGTGGGAAATAGGCATTCCTGATAGATCTGCTGCAGAATTTTACATTCCTGATCCAAATCCACATCTCATTAATAGGCTTTTTGTCAACCACCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGGTACACAGAACTGTATCCTGATGCTGATTTGATTTACACAGTTGGTGCTAGTGATTATTCGAAAGACTGGTTTTTCGCTCAGGTTCCCAGAAAAAAAGAGGATAACACTCTTCAAGGAACAACTTGGCAAATTAAGTTTGAACTCAATAATGTTGCTCGGGGAAGTACATATAAACTAAGAGTTGCAATTGCGTCTGCAACATTAGCCGAAGTGCAGATTCGAGTAAATGATCCAAATGCAAAGCGTCCCCTATTTACCACTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGGATTCACGGGCTCTATCGGCTGTACAATGTGAATGTACCAGGTGTTACTCTTGTTGATGGCAGAAACACTATATTTTTAACCCAACCAAGATGCAACAGCCCTTTCCAGGGGATCATCTACGATTATATTCGTTTGGAAGGTCCTCCTTGTTTTTAA 1857 0.4249 MDNGILQVTLSNPEGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGSKGIFDVIKGTCFKVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFIMRRGSSGFYSYAIYEHLAGWPDFDIGETRITFKLRKDKFNYMAIEDNRQRIMPLPDDRLPGRCQPLAYPEAVLLVNPKNPQLKGEVDDKYQYSCKNIDNQVHGWISFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLDPKFRGGEPWKKVFGPVFIYLNSGSIGDDTLWLWEDAKIQMTTEVESWPYFFPASEDFLKSDQRGNVSGRLLVLDRCISSDLMPANGAYVGLAPPGEAGSWQRECKDYQFWTRADENGFFAIKNVRPGDYNLYAWVPGFVGDYRFDDPMKIDSGSYIEVGEIVYEAPRDGPTLWEIGIPDRSAAEFYIPDPNPHLINRLFVNHPDRFRQYGLWDRYTELYPDADLIYTVGASDYSKDWFFAQVPRKKEDNTLQGTTWQIKFELNNVARGSTYKLRVAIASATLAEVQIRVNDPNAKRPLFTTGLIGRDNSIARHGIHGLYRLYNVNVPGVTLVDGRNTIFLTQPRCNSPFQGIIYDYIRLEGPPCF 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0725 618 Pfam Rhamnogalacturonate lyase family 1 184 IPR010325 -
Prci15g0725 618 Pfam Polysaccharide lyase family 4, domain III 424 612 IPR029411 -
Prci15g0725 618 SUPERFAMILY Galactose-binding domain-like 421 613 IPR008979 -
Prci15g0725 618 CDD RGL4_N 1 277 - -
Prci15g0725 618 CDD RGL4_C 426 613 - -
Prci15g0725 618 Gene3D - 1 292 IPR014718 GO:0030246
Prci15g0725 618 SUPERFAMILY Galactose mutarotase-like 4 281 IPR011013 GO:0003824|GO:0005975|GO:0030246
Prci15g0725 618 SUPERFAMILY Starch-binding domain-like 314 411 IPR013784 GO:0030246
Prci15g0725 618 CDD RGL4_M 315 414 IPR029413 -
Prci15g0725 618 Gene3D - 422 613 - -
Prci15g0725 618 FunFam Rhamnogalacturonate lyase B 312 411 - -
Prci15g0725 618 Gene3D - 312 406 - -
Prci15g0725 618 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 616 - -
Prci15g0725 618 Pfam Polysaccharide lyase family 4, domain II 338 409 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0725 Prci-Chr15 4669728 4675880 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0725 1 616 Polysaccharide Lyase AT1G09910 71.916 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0725 K18195 - gmx:100814185 1141.33