Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0724 ATGTCGATCCCAGGGGTCCGATGGCACCTTCAAGGTAGTCATGTGGTGATGGATAATGGCATACTCCAAGTTACCTTATCAAACCCTGAGGGAATTGTTACTGGGATTCGATATAACGGTGTTGACAATTTGCTTGAGGTCCTTAACAAGGAGACTAATAGAGGGTACTGGGACCTTGTTTGGAGTGCACCAGGAAGCAAAGGAATCTTTGATGTGATAAAAGGAACATGTTTTAAAGTTATAGTTCAAAACGAGGAACAGGTGGAGCTTTCATTCACACGAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTTCCCTTAAATATTGATAAAAGATTTATAATGCGCCGTGGTTCATCAGGCTTCTACTCTTATGCAATATATGAGCACTTAGCTGGATGGCCAGATTTTGACATTGGTGAAACGAGGATTACTTTCAAGCTGAGAAAAGACAAGTTCAATTACATGGCTATAGAAGACAATAGGCAAAGGATTATGCCTCTTCCAGATGATCGGTTACCAGGAAGATGCCAGCCCTTGGCCTACCCAGAAGCTGTCCTGCTAGTCAATCCCAAAAATCCACAACTCAAAGGCGAGGTGGATGACAAGTATCAATATTCATGTAAAAACATAGATAATCAAGTTCATGGGTGGATATCTTTCAACCCACCAGTGGGATTCTGGCAGATCACGCCCAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAGCAGAATTTGACCTCACATGTTGGCCCTACCACACTTGCTATGTTTCTTAGTTCACACTATGCTGGACAAGATTTAGATCCCAAATTTAGAGGTGGTGAACCATGGAAGAAGGTTTTTGGTCCTGTCTTTATTTATCTCAACTCTGGATCAATTGGTGATGACACACTTTGGCTGTGGGAGGATGCTAAAATTCAGATGACAACTGAAGTCGAAAGTTGGCCATATTTTTTCCCAGCTTCAGAGGATTTTTTGAAGTCAGATCAACGGGGTAATGTTAGTGGTAGGCTACTTGTGTTAGACAGGTGCATCAGCTCAGATTTGATGCCAGCAAATGGTGCTTATGTTGGTCTTGCCCCACCAGGAGAGGCAGGGTCTTGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGATGAGAATGGATTTTTTGCCATTAAGAATGTACGTCCAGGGGACTACAACCTTTATGCTTGGGTCCCTGGTTTTGTCGGAGACTACAGATTTGATGATCCGATGAAGATAGATTCAGGTTCCTATATCGAAGTGGGTGAAATTGTGTATGAGGCCCCAAGAGATGGACCCACGTTGTGGGAAATAGGCATTCCTGATAGATCTGCTGCAGAATTTTACATTCCTGATCCAAATCCACATCTCATTAATAGGCTTTTTGTCAACCACCCAGACAGGCAGTATGGATTGTGGGACAGGTACACAGAACTGTATCCTGATGCTGATTTGATTTACACAGTTGGTGCTAGTGATTATTCGAAAGACTGGTTTTTCGCTCAGGTTCCCAGAAAAAAAGAGGATAACACTCTTCAAGGAACAACTTGGCAAATTAAGTTTGAACTCAATAATGTTGCTCGGGGAAGTACATATAAACTAAGAGTTGCAATTGCGTCTGCAACATTAGCCGAAGTGCAGATTCGAGTAAATGATCCAAATGCAAAGCGTCCCCTATTTACCACTGGATTAATAGGAAGGGACAACTCAATTGCAAGACATGGGATTCACGGGCTCTATCGGCTGTACAATGTGAATGTACCAGGTGTTACTCTTGTTGATGGCAGAAACACTATATTTTTAACCCAACCAAGATGCAACAGCCCTTTCCAGGGGATCATCTACGATTATATTCGTTTGGAAGGTCCTCCTTGTTTTTAA 1899 0.4281 MSIPGVRWHLQGSHVVMDNGILQVTLSNPEGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSAPGSKGIFDVIKGTCFKVIVQNEEQVELSFTRMWDPSLEGKFVPLNIDKRFIMRRGSSGFYSYAIYEHLAGWPDFDIGETRITFKLRKDKFNYMAIEDNRQRIMPLPDDRLPGRCQPLAYPEAVLLVNPKNPQLKGEVDDKYQYSCKNIDNQVHGWISFNPPVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSSHYAGQDLDPKFRGGEPWKKVFGPVFIYLNSGSIGDDTLWLWEDAKIQMTTEVESWPYFFPASEDFLKSDQRGNVSGRLLVLDRCISSDLMPANGAYVGLAPPGEAGSWQRECKDYQFWTRADENGFFAIKNVRPGDYNLYAWVPGFVGDYRFDDPMKIDSGSYIEVGEIVYEAPRDGPTLWEIGIPDRSAAEFYIPDPNPHLINRLFVNHPDRQYGLWDRYTELYPDADLIYTVGASDYSKDWFFAQVPRKKEDNTLQGTTWQIKFELNNVARGSTYKLRVAIASATLAEVQIRVNDPNAKRPLFTTGLIGRDNSIARHGIHGLYRLYNVNVPGVTLVDGRNTIFLTQPRCNSPFQGIIYDYIRLEGPPCF 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0724 632 Gene3D - 8 308 IPR014718 GO:0030246
Prci15g0724 632 Pfam Polysaccharide lyase family 4, domain II 354 425 IPR029413 -
Prci15g0724 632 SUPERFAMILY Galactose-binding domain-like 437 627 IPR008979 -
Prci15g0724 632 SUPERFAMILY Starch-binding domain-like 330 427 IPR013784 GO:0030246
Prci15g0724 632 FunFam Rhamnogalacturonate lyase B 328 427 - -
Prci15g0724 632 CDD RGL4_C 442 627 - -
Prci15g0724 632 Gene3D - 328 422 - -
Prci15g0724 632 Pfam Polysaccharide lyase family 4, domain III 440 626 IPR029411 -
Prci15g0724 632 CDD RGL4_N 6 293 - -
Prci15g0724 632 Pfam Rhamnogalacturonate lyase family 12 200 IPR010325 -
Prci15g0724 632 CDD RGL4_M 331 430 IPR029413 -
Prci15g0724 632 Gene3D - 438 627 - -
Prci15g0724 632 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 13 630 - -
Prci15g0724 632 SUPERFAMILY Galactose mutarotase-like 12 297 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0724 Prci-Chr15 4669728 4675882 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0724 1 630 Polysaccharide Lyase AT1G09910 70.886 0.0 938
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0724 K18195 - gmx:100814185 1151.35