Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0723 ATGGCGCTAGCAGGAGTGCAACTGCTTATTGAAGATAATCATGTGGTGATTGACAATGGCATACTAAAGGTAACCTTGTCAAATCCTGGTGGAATAGTCACAGGAATAGAATATAATGGCATCGACAACTTGCTCGAATATCAGAACGACGAATCTAATAGAGGGTACTGGGATCTTGTGTGGAGCTCGCCGACAAGTCCTGGAACCACTGGAATATTTGATGTGATAAGGGGAACCTATTTCAGAGTGATAATGGAAAATGAGCAACAGGTTGAGTTATCCTTCACAAGAACGTGGGATGCCTCACTTGAAGGCAAGCTGGTTCCCTTAAACATCGATAAAAGGTTCATAATGTGTCGTGGTTGCTCTGGCCTCTACTCCTATGCCATTTACGAACACTTAGATGACTGGCCCGCTTTCAATCTCGACGAAACCAGAATTGCTTTCAAGCTCAGCAGAGACAAGTTTCATTACATGGCAATGGCAGATAATAGACAAAGAAACATGCCACTCCCGAGTGACCGATCACCCCCTAGAGGTCAAGCACTTGCCTATCCCGAGGCTGTTCTTCTGGTTAATCCTATTGAACCTGAATTGAAAGGAGAGGTGGACGATAAGTACCAATATTCATGTGACAACAAAGACAGCAAGTTGCATGGGTGGATTTCCACGGAGACAGCGGTAGGATTCTGGCTAATAACACCCAGCAACGAGTTCCGATCCGGTGGACCTCTCAAGCAGAACTTAACTTCTCACGTGGGACCTGCCACTCTTGCTGTGTTTCTAAGCCCTCATTATAGCGGAGAAGATTTGGTGCCAAAATTCAAAGCCGGCGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATCTATTTGAATTCTTCCGATAACGGAGACAACCCAATTAATAAGCTATGGGATGACGCTAAACTTCAGATGCAGATAGAAGTTCAAAGCTGGCCCTACAATTTTCCTGCCTCACAAGATTACCTAAAGTGGGACGAACGTGGCAATGTCAATGGTAGGCTACTCGTCCGAGACAGGTACATTGGAGATGATTATATCTCAGCAAAAGGAGCTTATGTTGGCTTGGCTCCGCCAGGAGACACTGGATCATGGCAAAGAGAATGCAAGAATTATCAATTTTGGGCCAAAGCAGACGATGATGGATATTTCTCCATCAGCAATATACGCCCTGGTGACTATAATCTTTACGCATGGGTCCCTGGTTTTATTGGTGACTATAAATATGACGTGGTTATGAACATAACTCCAGGTTGTGACATAGTCGTAGGTGATCTTGTGTATGAACCTCCTAGAGCTGGTCCAACATTGTGGGAAATAGGCACCCCTGATCGTACAGCTGCTGAGTTTTATGTTCCTGATCCTAATCCCAAATTTGTCAACAAGCTCTATGTTAATCATCCTGACAAGTTTAGGCAGTATGGTTTATGGGAGAGATATGCAGAGTTATACCCTGACAGTGACTTGATTTACACAGTTGGTGTTAGCGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACTACATGGCAAATCAAGTTCAAACAGGACAGAGTGAATAAGAGAAGTGCCTATAAACTGCGCATAGCTCTGGCATCGGCAACATTTTCTGAACTACAAGTTCGAGTTAATGATCCAAAAGCACCTCGTCCTCTGTTTTCAAGTGGATTGATAGGAAGGGATAACTCCATTGCTAGGCATGGAATTCATGGGTTGTATTGGCTTTTCACTGTGGACATATGGGGTGCTCGCCTCGTGGAAGGAGAAAATACCATATTTTTAACTCAGTCAAGAGCCAACGGCCCATTTCAGGGGATTTTGTATGATTATATTCGTTTAGAAGGCCCTCCCTCCTCTAGTTCCGGCGACGAGATTTGA 1935 0.4403 MALAGVQLLIEDNHVVIDNGILKVTLSNPGGIVTGIEYNGIDNLLEYQNDESNRGYWDLVWSSPTSPGTTGIFDVIRGTYFRVIMENEQQVELSFTRTWDASLEGKLVPLNIDKRFIMCRGCSGLYSYAIYEHLDDWPAFNLDETRIAFKLSRDKFHYMAMADNRQRNMPLPSDRSPPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSKLHGWISTETAVGFWLITPSNEFRSGGPLKQNLTSHVGPATLAVFLSPHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSSDNGDNPINKLWDDAKLQMQIEVQSWPYNFPASQDYLKWDERGNVNGRLLVRDRYIGDDYISAKGAYVGLAPPGDTGSWQRECKNYQFWAKADDDGYFSISNIRPGDYNLYAWVPGFIGDYKYDVVMNITPGCDIVVGDLVYEPPRAGPTLWEIGTPDRTAAEFYVPDPNPKFVNKLYVNHPDKFRQYGLWERYAELYPDSDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKQDRVNKRSAYKLRIALASATFSELQVRVNDPKAPRPLFSSGLIGRDNSIARHGIHGLYWLFTVDIWGARLVEGENTIFLTQSRANGPFQGILYDYIRLEGPPSSSSGDEI 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0723 644 Pfam Polysaccharide lyase family 4, domain II 358 429 IPR029413 -
Prci15g0723 644 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 636 - -
Prci15g0723 644 SUPERFAMILY Starch-binding domain-like 378 420 IPR013784 GO:0030246
Prci15g0723 644 SUPERFAMILY Galactose mutarotase-like 12 306 IPR011013 GO:0003824|GO:0005975|GO:0030246
Prci15g0723 644 Gene3D - 7 315 IPR014718 GO:0030246
Prci15g0723 644 Pfam Polysaccharide lyase family 4, domain III 444 632 IPR029411 -
Prci15g0723 644 Gene3D - 334 424 - -
Prci15g0723 644 Pfam Rhamnogalacturonate lyase family 10 203 IPR010325 -
Prci15g0723 644 CDD RGL4_C 446 633 - -
Prci15g0723 644 Gene3D - 441 633 - -
Prci15g0723 644 CDD RGL4_N 11 296 - -
Prci15g0723 644 CDD RGL4_M 335 434 IPR029413 -
Prci15g0723 644 FunFam Rhamnogalacturonate lyase B 332 431 - -
Prci15g0723 644 SUPERFAMILY Galactose-binding domain-like 442 633 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0723 Prci-Chr15 4663404 4668447 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0723 1 635 Polysaccharide Lyase AT1G09890 70.440 0.0 939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0723 K18195 - gmx:100814721 1158.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0723 15 4663404 4668447 Prci15g0723 15 4663404 4668447 ECH