Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0722 ATGGCGCTAGCAGGAGTGCAACTGCTTATTGAAGATAATCATGTGGTGATTGACAATGGCATACTAAAGGTAACCTTGTCAAATCCTGGTGGAATAGTCACAGGAATAGAATATAATGGCATCGACAACTTGCTCGAATATCAGAACGACGAATCTAATAGAGGGTACTGGGATCTTGTGTGGAGCTCGCCGACAAGTCCTGGAACCACTGGAATATTTGATGTGATAAGGGGAACCTATTTCAGAGTGATAATGGAAAATGAGCAACAGGTTGAGTTATCCTTCACAAGAACGTGGGATGCCTCACTTGAAGGCAAGCTGGTTCCCTTAAACATCGATAAAAGGTTCATAATGTGTCGTGGTTGCTCTGGCCTCTACTCCTATGCCATTTACGAACACTTAGATGACTGGCCCGCTTTCAATCTCGACGAAACCAGAATTGCTTTCAAGCTCAGCAGAGACAAGTTTCATTACATGGCAATGGCAGATAATAGACAAAGAAACATGCCACTCCCGAGTGACCGATCACCCCCTAGAGGTCAAGCACTTGCCTATCCCGAGGCTGTTCTTCTGGTTAATCCTATTGAACCTGAATTGAAAGGAGAGGTGGACGATAAGTACCAATATTCATGTGACAACAAAGACAGCAAGTTGCATGGGTGGATTTCCACGGAGACAGCGGTAGGATTCTGGCTAATAACACCCAGCAACGAGTTCCGATCCGGTGGACCTCTCAAGCAGAACTTAACTTCTCACGTGGGACCTGCCACTCTTGCTGTGTTTCTAAGCCCTCATTATAGCGGAGAAGATTTGGTGCCAAAATTCAAAGCCGGCGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATCTATTTGAATTCTTCCGATAACGGAGACAACCCAATTAATAAGCTATGGGATGACGCTAAACTTCAGATGCAGATAGAAGTTCAAAGCTGGCCCTACAATTTTCCTGCCTCACAAGATTACCTAAAGTGGGACGAACGTGGCAATGTCAATGGTAGGCTACTCGTCCGAGACAGGTACATTGGAGATGATTATATCTCAGCAAAAGGAGCTTATGTTGGCTTGGCTCCGCCAGGAGACACTGGATCATGGCAAAGAGAATGCAAGTTTACTTGTTATCAGAATTATCAATTTTGGGCCAAAGCAGACGATGATGGATATTTCTCCATCAGCAATATACGCCCTGGTGACTATAATCTTTACGCATGGGTCCCTGGTTTTATTGGTGACTATAAATATGACGTGGTTATGAACATAACTCCAGGTTGTGACATAGTCGTAGGTGATCTTGTGTATGAACCTCCTAGAGCTGGTCCAACATTGTGGGAAATAGGCACCCCTGATCGTACAGCTGCTGAGTTTTATGTTCCTGATCCTAATCCCAAATTTGTCAACAAGCTCTATGTTAATCATCCTGACAAGTTTAGGCAGTATGGTTTATGGGAGAGATATGCAGAGTTATACCCTGACAGTGACTTGATTTACACAGTTGGTGTTAGCGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAAGATGATAATACATATCAAGGAACTACATGGCAAATCAAGTTCAAACAGGACAGAGTGAATAAGAGAAGTGCCTATAAACTGCGCATAGCTCTGGCATCGGCAACATTTTCTGAACTACAAGTTCGAGTTAATGATCCAAAAGCACCTCGTCCTCTGTTTTCAAGTGGATTGATAGGAAGGGATAACTCCATTGCTAGGCATGGAATTCATGGGTTGTATTGGCTTTTCACTGTGGACATATGGGGTGCTCGCCTCGTGGAAGGAGAAAATACCATATTTTTAACTCAGTCAAGAGCCAACGGCCCATTTCAGGGGATTTTGTATGATTATATTCGTTTAGAAGGCCCTCCCTCCTCTAGTTCCGGCGACGAGATTTGA 1950 0.439 MALAGVQLLIEDNHVVIDNGILKVTLSNPGGIVTGIEYNGIDNLLEYQNDESNRGYWDLVWSSPTSPGTTGIFDVIRGTYFRVIMENEQQVELSFTRTWDASLEGKLVPLNIDKRFIMCRGCSGLYSYAIYEHLDDWPAFNLDETRIAFKLSRDKFHYMAMADNRQRNMPLPSDRSPPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSKLHGWISTETAVGFWLITPSNEFRSGGPLKQNLTSHVGPATLAVFLSPHYSGEDLVPKFKAGEAWKKVFGPVFIYLNSSDNGDNPINKLWDDAKLQMQIEVQSWPYNFPASQDYLKWDERGNVNGRLLVRDRYIGDDYISAKGAYVGLAPPGDTGSWQRECKFTCYQNYQFWAKADDDGYFSISNIRPGDYNLYAWVPGFIGDYKYDVVMNITPGCDIVVGDLVYEPPRAGPTLWEIGTPDRTAAEFYVPDPNPKFVNKLYVNHPDKFRQYGLWERYAELYPDSDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKQDRVNKRSAYKLRIALASATFSELQVRVNDPKAPRPLFSSGLIGRDNSIARHGIHGLYWLFTVDIWGARLVEGENTIFLTQSRANGPFQGILYDYIRLEGPPSSSSGDEI 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0722 649 SUPERFAMILY Starch-binding domain-like 381 425 IPR013784 GO:0030246
Prci15g0722 649 Pfam Rhamnogalacturonate lyase family 10 203 IPR010325 -
Prci15g0722 649 FunFam Rhamnogalacturonate lyase B 332 436 - -
Prci15g0722 649 Gene3D - 334 429 - -
Prci15g0722 649 SUPERFAMILY Galactose mutarotase-like 12 306 IPR011013 GO:0003824|GO:0005975|GO:0030246
Prci15g0722 649 Gene3D - 446 638 - -
Prci15g0722 649 Pfam Polysaccharide lyase family 4, domain II 358 434 IPR029413 -
Prci15g0722 649 Pfam Polysaccharide lyase family 4, domain III 449 637 IPR029411 -
Prci15g0722 649 Gene3D - 7 315 IPR014718 GO:0030246
Prci15g0722 649 CDD RGL4_N 11 296 - -
Prci15g0722 649 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 12 641 - -
Prci15g0722 649 CDD RGL4_M 335 439 IPR029413 -
Prci15g0722 649 CDD RGL4_C 451 638 - -
Prci15g0722 649 SUPERFAMILY Galactose-binding domain-like 447 638 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0722 Prci-Chr15 4663404 4668455 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0722 1 640 Polysaccharide Lyase AT1G09890 69.891 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0722 K18195 - gmx:100814721 1152.12