Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0703 ATGGCAGCCGTGAATCCACAACCTTTGCAGGCGCTTCCATTCGAGGAAAACGTGCGGGATCCAGTTCCTATAGAGGACGGCGACGACGACTATGAGGATGGGGGTGCTAGTGGCGATGCTATGGATGAGTTGGAAGAGGGAAATGTTAATTCAGTGACCGTGCCAAGCCATGGAGTTGTTACGACGTCCCGAACTAGTGAGCTCACTCTTTCTTTCGAGGGCGAGGTTTATGTGTTTCCTGCTGTGACACCGGAGAAGGTGCAAGCTGTTTTGCTTCTTTTGGGAGGACGTGATGTGCCTGCATGTGCTCCTTCTGTTGAAGTACCATTTGACGAAAGCAACAAGGGCATAGGTGATGCTCCAAAGCAGTTGAACATTTCGAGAAGAATAGCCTCCTTGGTTAGGTTCCGGGAAAAACGCAAGGAAAGATGTTTTGACAAGAAGATTAGGTACACTGTGAGAAAAGAGGTGGCACAAAGGATGCATCGCAAGAACGGACAATTTGCATCCTTGAAAGAAAGTCCTGGTTTATCTAATTTGGTTTCTACAGAAAGCTTTCTTCAGGATGGCACTCATTCTGGAACTCTACGTAGATGTCAACATTGTGGTGTTAGTGAAAATAATACTCCTGCAATGCGTCGTGGTCCAGCTGGACCAAGGACACTATGTAATGCATGTGGCCTTATGTGGGCAAATAAGGGAACACTCAGAGATCTCAACAAGGGAGGAAGAAATATTTCTGTTGAGCAAAGTGAAGTGGAGACTCCTCTTGAGGTCAAACCTATTATCCTAGAAGGAGGAGAATTGCCTGACATTCATAAGGCATTTCTGAAGATCCTTCCAAGGCCATTGCTGAAGGGTCTAATAATCATGCTGTCAACCCCAGTGACGAGGAATTGCACTCTGGTGAACACTTGTCAACCACAATGCCATCAGGCTTTTTGTCTTCTTCAGCGAATGATGTTGAGCAGGAACCTCTGGCTGAGCTTTCTAATCCTTCCGACACAGATATTGATATTCCTGGAAGCTTCGATTAGAAGTGCTGTATTCTAG 1053 0.4615 MAAVNPQPLQALPFEENVRDPVPIEDGDDDYEDGGASGDAMDELEEGNVNSVTVPSHGVVTTSRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPACAPSVEVPFDESNKGIGDAPKQLNISRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGLSNLVSTESFLQDGTHSGTLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLNKGGRNISVEQSEVETPLEVKPIILEGGELPDIHKAFLKILPRPLLKGLIIMLSTPVTRNCTLVNTCQPQCHQAFCLLQRMMLSRNLWLSFLILPTQILIFLEASIRSAVF 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0703 350 PANTHER GATA TRANSCRIPTION FACTOR 28 3 254 IPR045280 GO:0006355
Prci15g0703 350 ProSitePatterns GATA-type zinc finger domain. 199 226 IPR000679 GO:0006355|GO:0043565
Prci15g0703 350 ProSiteProfiles CCT domain profile. 129 171 IPR010402 GO:0005515
Prci15g0703 350 Pfam tify domain 64 95 IPR010399 -
Prci15g0703 350 ProSiteProfiles Tify domain profile. 61 96 IPR010399 -
Prci15g0703 350 MobiDBLite consensus disorder prediction 22 40 - -
Prci15g0703 350 Pfam GATA zinc finger 199 235 IPR000679 GO:0006355|GO:0043565
Prci15g0703 350 Gene3D - 191 253 IPR013088 GO:0006355|GO:0008270
Prci15g0703 350 SMART tify_2 61 96 IPR010399 -
Prci15g0703 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 245 - -
Prci15g0703 350 SMART GATA_3 193 246 IPR000679 GO:0006355|GO:0043565
Prci15g0703 350 Pfam CCT motif 129 170 IPR010402 GO:0005515
Prci15g0703 350 CDD ZnF_GATA 198 242 IPR000679 GO:0006355|GO:0043565
Prci15g0703 350 ProSiteProfiles GATA-type zinc finger domain profile. 193 249 IPR000679 GO:0006355|GO:0043565
Prci15g0703 350 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0703 Prci-Chr15 4547706 4576325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0703 28 241 Tify Gene Family AT1G51600 50.644 4.45e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci15g0703 CCT 1.3e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0703 - - qsa:O6P43_019551 397.897