Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0702 ATGGCAGCCGTGAATCCACAACCTTTGCAGGCGCTTCCATTCGAGGAAAACGTGCGGGATCCAGTTCCTATAGAGGACGGCGACGACGACTATGAGGATGGGGGTGCTAGTGGCGATGCTATGGATGAGTTGGAAGAGGGAAATGTTAATTCAGTGACCGTGCCAAGCCATGGAGTTGTTACGACGTCCCGAACTAGTGAGCTCACTCTTTCTTTCGAGGGCGAGGTTTATGTGTTTCCTGCTGTGACACCGGAGAAGGTGCAAGCTGTTTTGCTTCTTTTGGGAGGACGTGATGTGCCTGCATGTGCTCCTTCTGTTGAAGTACCATTTGACGAAAGCAACAAGGGCATAGGTGATGCTCCAAAGCAGTTGAACATTTCGAGAAGAATAGCCTCCTTGGTTAGGTTCCGGGAAAAACGCAAGGAAAGATGTTTTGACAAGAAGATTAGGTACACTGTGAGAAAAGAGGTGGCACAAAGGATGCATCGCAAGAACGGACAATTTGCATCCTTGAAAGAAAGTCCTGGTTTATCTAATTTGGTTTCTACAGAAAGCTTTCTTCAGGATGGCACTCATTCTGGAACTCTACGTAGATGTCAACATTGTGGTGTTAGTGAAAATAATACTCCTGCAATGCGTCGTGGTCCAGCTGGACCAAGGACACTATGTAATGCATGTGGCCTTATGTGGGCAAATAAGGGAACACTCAGAGATCTCAACAAGGGAGGAAGAAATATTTCTGTTGAGCAAAGTGAAGTGGAGACTCCTCTTGAGGTCAAACCTATTATCCTAGAAGGAGGAGAATTGCCTGACATTCATAAGGCATTTCTGAAGATCCTTCCAAGGCCATTGCTGAAGGGTCTAATAATCATGCTGTCAACCCCAGTGACGAGGAATTGCACTCTGGTGAACACTTGTCAACCACAATGCCATCAGGCTTTTTGTCTTCTTCAGCGAATGATGTTGAGCAGGAACCTCTGGCTGAGCTTTCTAATCCTTCCGACACAGATATTGATATTCCTGGAAGCTTCGATTAGAAGGTGA 1044 0.4626 MAAVNPQPLQALPFEENVRDPVPIEDGDDDYEDGGASGDAMDELEEGNVNSVTVPSHGVVTTSRTSELTLSFEGEVYVFPAVTPEKVQAVLLLLGGRDVPACAPSVEVPFDESNKGIGDAPKQLNISRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESPGLSNLVSTESFLQDGTHSGTLRRCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLNKGGRNISVEQSEVETPLEVKPIILEGGELPDIHKAFLKILPRPLLKGLIIMLSTPVTRNCTLVNTCQPQCHQAFCLLQRMMLSRNLWLSFLILPTQILIFLEASIRR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0702 347 ProSitePatterns GATA-type zinc finger domain. 199 226 IPR000679 GO:0006355|GO:0043565
Prci15g0702 347 Pfam tify domain 64 95 IPR010399 -
Prci15g0702 347 ProSiteProfiles CCT domain profile. 129 171 IPR010402 GO:0005515
Prci15g0702 347 Pfam CCT motif 129 170 IPR010402 GO:0005515
Prci15g0702 347 ProSiteProfiles Tify domain profile. 61 96 IPR010399 -
Prci15g0702 347 MobiDBLite consensus disorder prediction 22 40 - -
Prci15g0702 347 Pfam GATA zinc finger 199 235 IPR000679 GO:0006355|GO:0043565
Prci15g0702 347 Gene3D - 191 253 IPR013088 GO:0006355|GO:0008270
Prci15g0702 347 SMART tify_2 61 96 IPR010399 -
Prci15g0702 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 194 245 - -
Prci15g0702 347 SMART GATA_3 193 246 IPR000679 GO:0006355|GO:0043565
Prci15g0702 347 PANTHER GATA TRANSCRIPTION FACTOR 28 3 254 IPR045280 GO:0006355
Prci15g0702 347 CDD ZnF_GATA 198 242 IPR000679 GO:0006355|GO:0043565
Prci15g0702 347 ProSiteProfiles GATA-type zinc finger domain profile. 193 249 IPR000679 GO:0006355|GO:0043565
Prci15g0702 347 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0702 Prci-Chr15 4547706 4577329 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0702 28 241 Tify Gene Family AT1G51600 50.644 5.15e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci15g0702 CCT 1.3e-13 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0702 - - qsa:O6P43_019551 397.897