Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0700 ATGTACGGACAACTCCCATCAATGAATGTCACTAATCGGATTAGCACCGGAGAAGATGAAGATGGCGCTGGCATTGGCGCGGAATCCATTGATAATCACAACATCCATTACGAAACGCAAGCCCTCGAAGATGGTAGTGGTGGAGTTGGGGGCGTAGTGGAGGATGTGAACTCCGATAACGTATATGTTTCTGGCAGTGGTTCTGAATTGTCCATCCCTCACGAGGATCCTAGCCAGCTTACGTTATCATTTCGTGGTCAAGTATATGTTTTTGACTCTGTTACCCCTGATAAGGTGCAAGCGGTATTGTTACTGTTGGGTGGATCTGAAATACCACCGGGTTCGCAATGTGAGGATATGGCCCCTCAAAATGAGAGGGGTGCGATGGATTACCCTGGAAGATGTAGCCAGCCACACCGAGCAGCCTCTTTAAGCAGGTTTCGTCAGAAGAGAAAAGAGCGATGCTTTGATAAGAAAGTTAGATACAGCGTGCGTCAAGAAGTTGCTCTCAGGATGCACCGTAATAAGGGTCAATTTACTTCTTCTAAGAAACAAGATGGAGCTAATAGTTTGGGTACAGTCCAAGAGTCAGGCCAGGATGACAATCAATCAGAAACCCTGTGCACACATTGTGGCACTAGTTCAAAATCCACCCCAATGATGCGGCGTGGGCCATCTGGACCAAGGTCACTGTGTAATGCTTGTGGACTTTTTTGGGCAAATAGGGGTACTTTGAGGGATTTATCCAAGAAGAACCACGAACATTCTCTTGCACCAGCTGAGCAGGTTGAACGGGATGATTCACACTGTCGGACCGCCAACCCTGCATGTAACAATCTTGGGGCTTTCTGTGATAATGATAAGCCAGCATAG 873 0.4731 MYGQLPSMNVTNRISTGEDEDGAGIGAESIDNHNIHYETQALEDGSGGVGGVVEDVNSDNVYVSGSGSELSIPHEDPSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGSEIPPGSQCEDMAPQNERGAMDYPGRCSQPHRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSLGTVQESGQDDNQSETLCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKKNHEHSLAPAEQVERDDSHCRTANPACNNLGAFCDNDKPA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0700 290 SMART tify_2 73 108 IPR010399 -
Prci15g0700 290 SMART GATA_3 202 255 IPR000679 GO:0006355|GO:0043565
Prci15g0700 290 Pfam CCT motif 140 182 IPR010402 GO:0005515
Prci15g0700 290 Pfam GATA zinc finger 208 244 IPR000679 GO:0006355|GO:0043565
Prci15g0700 290 CDD ZnF_GATA 208 252 IPR000679 GO:0006355|GO:0043565
Prci15g0700 290 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Prci15g0700 290 Pfam tify domain 76 107 IPR010399 -
Prci15g0700 290 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Prci15g0700 290 PANTHER GATA TRANSCRIPTION FACTOR 28 25 262 IPR045280 GO:0006355
Prci15g0700 290 MobiDBLite consensus disorder prediction 1 16 - -
Prci15g0700 290 MobiDBLite consensus disorder prediction 181 206 - -
Prci15g0700 290 ProSitePatterns GATA-type zinc finger domain. 208 235 IPR000679 GO:0006355|GO:0043565
Prci15g0700 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 254 - -
Prci15g0700 290 ProSiteProfiles GATA-type zinc finger domain profile. 202 261 IPR000679 GO:0006355|GO:0043565
Prci15g0700 290 MobiDBLite consensus disorder prediction 1 28 - -
Prci15g0700 290 Gene3D - 198 258 IPR013088 GO:0006355|GO:0008270
Prci15g0700 290 MobiDBLite consensus disorder prediction 175 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0700 Prci-Chr15 4535109 4542677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0700 67 269 Tify Gene Family AT4G24470 65.700 4.66e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci15g0700 CCT 3.6e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0700 - - pvu:PHAVU_008G182900g 396.356