Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0699 ATGTACGGACAACTCCCATCAATGAATGTCACTAATCGGATTAGCACCGGAGAAGATGAAGATGGCGCTGGCATTGGCGCGGAATCCATTGATAATCACAACATCCATTACGAAACGCAAGCCCTCGAAGATGGTAGTGGTGGAGTTGGGGGCGTAGTGGAGGATGTGAACTCCGATAACGTATATGTTTCTGGCAGTGGTTCTGAATTGTCCATCCCTCACGAGGATCCTAGCCAGCTTACGTTATCATTTCGTGGTCAAGTATATGTTTTTGACTCTGTTACCCCTGATAAGGTGCAAGCGGTATTGTTACTGTTGGGTGGATCTGAAATACCACCGGGTTCGCAATGTGAGGATATGGCCCCTCAAAATGAGAGGGGTGCGATGGATTACCCTGGAAGATGTAGCCAGCCACACCGAGCAGCCTCTTTAAGCAGGTTTCGTCAGAAGAGAAAAGAGCGATGCTTTGATAAGAAAGTTAGATACAGCGTGCGTCAAGAAGTTGCTCTCAGGATGCACCGTAATAAGGGTCAATTTACTTCTTCTAAGAAACAAGATGGAGCTAATAGTTTGGGTACAGTCCAAGAGTCAGGCCAGGATGACAATCAATCAGAAACCCTGTGCACACATTGTGGCACTAGTTCAAAATCCACCCCAATGATGCGGCGTGGGCCATCTGGACCAAGGTCACTGTGTAATGCTTGTGGACTTTTTTGGGCAAATAGGAGGTGCCACTATATTGGTTTGTCTCAAATTTGCAACTTCATTACTCCTAGCTTCTGA 783 0.4662 MYGQLPSMNVTNRISTGEDEDGAGIGAESIDNHNIHYETQALEDGSGGVGGVVEDVNSDNVYVSGSGSELSIPHEDPSQLTLSFRGQVYVFDSVTPDKVQAVLLLLGGSEIPPGSQCEDMAPQNERGAMDYPGRCSQPHRAASLSRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSLGTVQESGQDDNQSETLCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRRCHYIGLSQICNFITPSF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0699 260 SMART tify_2 73 108 IPR010399 -
Prci15g0699 260 Gene3D - 198 249 IPR013088 GO:0006355|GO:0008270
Prci15g0699 260 ProSiteProfiles GATA-type zinc finger domain profile. 202 238 IPR000679 GO:0006355|GO:0043565
Prci15g0699 260 Pfam CCT motif 140 182 IPR010402 GO:0005515
Prci15g0699 260 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 245 - -
Prci15g0699 260 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Prci15g0699 260 Pfam GATA zinc finger 208 242 IPR000679 GO:0006355|GO:0043565
Prci15g0699 260 ProSiteProfiles CCT domain profile. 140 182 IPR010402 GO:0005515
Prci15g0699 260 PANTHER GATA TRANSCRIPTION FACTOR 28 25 242 IPR045280 GO:0006355
Prci15g0699 260 Pfam tify domain 76 107 IPR010399 -
Prci15g0699 260 CDD ZnF_GATA 208 245 IPR000679 GO:0006355|GO:0043565
Prci15g0699 260 MobiDBLite consensus disorder prediction 1 16 - -
Prci15g0699 260 MobiDBLite consensus disorder prediction 181 206 - -
Prci15g0699 260 ProSitePatterns GATA-type zinc finger domain. 208 235 IPR000679 GO:0006355|GO:0043565
Prci15g0699 260 MobiDBLite consensus disorder prediction 1 28 - -
Prci15g0699 260 SMART GATA_3 202 259 IPR000679 GO:0006355|GO:0043565
Prci15g0699 260 MobiDBLite consensus disorder prediction 175 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0699 Prci-Chr15 4535108 4541820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0699 67 242 Tify Gene Family AT4G24470 67.778 1.79e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci15g0699 CCT 3e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0699 - - qsa:O6P43_019552 345.895