Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0681 ATGGCGAGGGAGAAGATCAAGATCAAGAAAATCGACAGCATAACGGCGAGGCAGGTGACATTCTCAAAGAGAAGGCGAGGGCTCATTAAGAAAGCTCAAGAGCTTGCTGTTCTTTGCGATGCTGAGGTTGGTCTCATTATTTTCTCTGCCACAGGAAAGCTCCATGATTATGCCAGTTCCAGTATAAAGGACATCGTTACAAGGTATGATCTGCACTGTCATGGCAGCAATCCATCGGACAGTCATTCTCTAGAGCTGCAGAACAGCAGTCACAGCGAATTGAGGAACGAGATTGCTGATAAAACCCAGGAACTTCGGCAGCTGAAGGGTGAAGATCTTGAAGGACTCAACCTCGATGACTTGCTGAAGCTGGAGAAAAAGCTTGACGTAGGACTCAGTCGTGTGAATCTGATTATGGACAAGCGGAATATGGGTGAAATCACTGAACTTCAGAGAAAGGTAGACAATTTGGCCAAAGCAAACAAGCAGATAAAGCAGAAGGTGGCTATTATGTGTAAAGGAAAAGGCCCCATGATGACGAACTCAGATATGGGCGGCCGAGGAGGTGTTTCATCAGAAGCAATGGATAATAATGTTTGCGGCTGTAATAATAATGGCCTTCTCGATGATGATTCCTCTAGCATATCTCTGAGATTAGGGCTCCCCTAG 669 0.4574 MAREKIKIKKIDSITARQVTFSKRRRGLIKKAQELAVLCDAEVGLIIFSATGKLHDYASSSIKDIVTRYDLHCHGSNPSDSHSLELQNSSHSELRNEIADKTQELRQLKGEDLEGLNLDDLLKLEKKLDVGLSRVNLIMDKRNMGEITELQRKVDNLAKANKQIKQKVAIMCKGKGPMMTNSDMGGRGGVSSEAMDNNVCGCNNNGLLDDDSSSISLRLGLP 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0681 222 Gene3D - 14 81 IPR036879 GO:0003677|GO:0046983
Prci15g0681 222 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Prci15g0681 222 Coils Coil 84 111 - -
Prci15g0681 222 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Prci15g0681 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Prci15g0681 222 Pfam K-box region 88 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci15g0681 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Prci15g0681 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Prci15g0681 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Prci15g0681 222 CDD MADS_MEF2_like 15 76 IPR033896 GO:0000977|GO:0045944
Prci15g0681 222 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Prci15g0681 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 148 - -
Prci15g0681 222 Coils Coil 147 167 - -
Prci15g0681 222 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Prci15g0681 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0681 Prci-Chr15 4424668 4428493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0681 1 222 MADS-box Gene Family AT4G24540 47.788 1.44e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Prci15g0681 K-box 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0681 - - jre:118343711 201.06