Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0645 ATGCTTTTAATTGGCCCAACCCTCCGTTTCTCCCCATTCTTATTCCCGTTTTACCCTTTCCTCCATCCTTTTCATCATTTCTGTTCACCCCTTTCTCCTGCACGGATCGCCTGCCACCTCTTCGTATCAAGATCATCTTCCGTTTCATTCTCCACCATTAGCTACTCCCGAATTTTACGAGCTCGCAGCTCACTGTTCGTGAGAAATTATAAAGTGCGCAGGAATATGGAATTTGAGGAGCAGGATCAGGAGCACGAAGAGGCGGAGGAAGAAATGGGGATTCCCGTGCCCCCGCCGAGTTACGACTCAGTTCGGTCAAAAAGGGGCGCTGCCTTCGGAGCCGAGGGAGGCTCATCCGGCCTGACCAGGGCTAGGAAAGGCGGTCCTACTGGAACGGTCAGGTACAGGGAGTGTCAAAAGAATCACGCCGTCAGCATCGGTGGCCACGCCGTTGACGGTTGTGGTGAGTTTCTGGCTGCGGGAGAGGAAGGCACACTCGACGCTCTCAAATGCGCCGCCTGCAACTGTCACCGCAACTTCCACCGCAAGGAGATCGAGGGGGAAACTAGCTCCTTTCACCTGCAACAGCCGCACAACCCCCAGTACCACCATCAATTTCCCCCTTATTACCGGGGGCCGCCGCCGCCGCCAGGAACAGGATACCTGCATCACCATCTGACAAATCCGGCGATGGTACATCACCGCCCTTTGGCTCTACCAGCAGCGGCATCCGGCGGGGGACCGAATAGAGAAGAGGAAGACATGTCGAATCCGAGCAGCAGCGGTGGAGGCGGGGGTTTCGGTGGTGGAGGGAGCGGCAGCGAAAGGAAGAAAAGGTTTAGAACGAAGTTCACGCAGGAGCAGAAGGAGAAGATGCTGGCATTTTCGGAAAAGGTGGGGTGGAGAATCCAGAAGCATGACGAGCCGGCGGTGGAGCAATTCTGTGCGGAGACTGGCGTCAAGAGACAGGTACTTAAGGTTTGGATGCATAACAATAAAAACACTCTCGGTAAGAAACCCTAA 1023 0.5503 MLLIGPTLRFSPFLFPFYPFLHPFHHFCSPLSPARIACHLFVSRSSSVSFSTISYSRILRARSSLFVRNYKVRRNMEFEEQDQEHEEAEEEMGIPVPPPSYDSVRSKRGAAFGAEGGSSGLTRARKGGPTGTVRYRECQKNHAVSIGGHAVDGCGEFLAAGEEGTLDALKCAACNCHRNFHRKEIEGETSSFHLQQPHNPQYHHQFPPYYRGPPPPPGTGYLHHHLTNPAMVHHRPLALPAAASGGGPNREEEDMSNPSSSGGGGGFGGGGSGSERKKRFRTKFTQEQKEKMLAFSEKVGWRIQKHDEPAVEQFCAETGVKRQVLKVWMHNNKNTLGKKP 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0645 340 Coils Coil 71 91 - -
Prci15g0645 340 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 135 184 IPR006456 -
Prci15g0645 340 MobiDBLite consensus disorder prediction 193 221 - -
Prci15g0645 340 SUPERFAMILY Homeodomain-like 264 338 IPR009057 -
Prci15g0645 340 MobiDBLite consensus disorder prediction 239 278 - -
Prci15g0645 340 Gene3D - 267 337 - -
Prci15g0645 340 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 108 336 - -
Prci15g0645 340 NCBIfam homeobox domain, ZF-HD class 277 334 IPR006455 -
Prci15g0645 340 Pfam ZF-HD protein dimerisation region 133 185 IPR006456 -
Prci15g0645 340 FunFam Zinc-finger homeodomain protein 2 270 338 - -
Prci15g0645 340 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 134 185 IPR006456 -
Prci15g0645 340 MobiDBLite consensus disorder prediction 78 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0645 Prci-Chr15 4221168 4222861 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0645 76 336 ZF-HD Transcription Factor Family AT4G24660 51.908 1.78e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Prci15g0645 ZF-HD_dimer 4.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0645 - - pcin:129294191 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0617 2 4523482 4525328 Prci15g0645 15 4221168 4222861 CCT
Prci15g0645 15 4221168 4222861 Prci15g0645 15 4221168 4222861 ECH