Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0635 ATGATGATTAACAAGGAGGAACGCGGAGGCGCAGGTATCCCCAGACTCTTGAAACTCGGCCATGAGCGTACCTGGGTCACCATGCCTCATGTTCTGGCAAAGGCATCGCCGCCGCCTGCGGCACCCGCTGAGCTCATGGAGCCACCGACGGTGACCTATGACAACAGGACCATGGCCATCATCATGGGTGTCGTGGTGGTGGTATTCTTCGTATCTGGCTTCGTTTCCCTGTACAGTCGTCAATGCGGGCACCGACGCACCCGATTCCGAGGGCACATCGACCTCGCTTTTCCAACGGGGCCGCCGCAATCCACTTCCCGGGCGCAGGGTCGAGGCGTAGGGCCGGAGATCATCGAGAGCTTCCCGACTTTCCTGTACTCGGCGGTGAAGGGAAGAGGGGCACTGGCATGCGCGGTGTGCTTAAACGAGTACCAGGACGATGAAACGCTGCGTTTAATCCCGAAATGCAGCCACGTCTTCCATCCGGAGTGCATCGACGGCTGGCTGGCGTCTCACCACACGTGCCCAGTGTGCCGGGCGAACCTGTTGGTTCCAGCACAGGGCCAGAGCGAGGCCACGCCTTTGGTAGGCGTAGGGATTCCAGAATCGGAAGAAGAAGAAGAGAACTGTGAAAGTGATCAATGGAGGAGGGAGAATATAAGAGTGAATCGGAGCGGAACGATGAGGGAGAGGGGGGGACCAAGTCGGTCGAGGTCGACGGGAGTGGTAATGGGGATATTGTTCGGGAGGTCACGTTCGACGGGGAGGGAGAGAGTGATGGGGGAGAACTGGGAGAGATACACGCTGAGGCTGGAGGAAGTGAAGACGGCGACAAGGTTGAAACGGACAAAGAGTTGCGTAACGTTCACGAGAATGAGCAGCGGCAGGAAGGGGTATCGAACCAGAAGCGTTGGCAGCACCAGCAACTACTGCGACCGCTCCATCACATCCCGTGCATTATTCCCCGTCAACCCATCCACTGCTTCATCGTCCCTATCATGA 1002 0.5808 MMINKEERGGAGIPRLLKLGHERTWVTMPHVLAKASPPPAAPAELMEPPTVTYDNRTMAIIMGVVVVVFFVSGFVSLYSRQCGHRRTRFRGHIDLAFPTGPPQSTSRAQGRGVGPEIIESFPTFLYSAVKGRGALACAVCLNEYQDDETLRLIPKCSHVFHPECIDGWLASHHTCPVCRANLLVPAQGQSEATPLVGVGIPESEEEEENCESDQWRRENIRVNRSGTMRERGGPSRSRSTGVVMGILFGRSRSTGRERVMGENWERYTLRLEEVKTATRLKRTKSCVTFTRMSSGRKGYRTRSVGSTSNYCDRSITSRALFPVNPSTASSSLS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0635 333 SMART ring_2 137 178 IPR001841 -
Prci15g0635 333 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Prci15g0635 333 SUPERFAMILY RING/U-box 117 186 - -
Prci15g0635 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 184 IPR013083 -
Prci15g0635 333 PANTHER RING FINGER DOMAIN-CONTAINING 44 191 - -
Prci15g0635 333 CDD RING-H2_EL5-like 137 179 - -
Prci15g0635 333 FunFam E3 ubiquitin-protein ligase ATL6 102 185 - -
Prci15g0635 333 Pfam Ring finger domain 136 179 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0635 Prci-Chr15 4144187 4145497 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0635 58 298 Rapid Response to Elicitors AT3G05200 37.500 5.72e-43 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0635 K10664 - gmx:100814384 225.713