Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0633 ATGCACAGAAAGCTCTTCCCTGCATCAACCACAACAAATCAAAGCCAAGAGTGTTCTGATTTTTGTGACCCAACTTGCCCTTACAACTGCTACTCTTACCCGGACCGCTACCTCCCGCCGCCGCCCATTTTACCTCCAAGTAATCAGATCTCGTCCTACTTGGCAATCGTTGCTTCATTATTCACTGTCATATTCGTTCTCGTTGGTTTCTACGTTCTCAAAATAAAGTGCTACTCTGATTGGTGTGGCCGGAGACGCAATGGATCCCTTGCCATGGAATCAGACAGCCTGGACGATGAGTTTGTTCGCGAGAATCAAGTTGATCACCCTATCTGGTTGATCACCACCATCGGCTTACAACAGTCAATCATAAAGTCCATTACAGTTTGTAAGTACAGAAAGGGCGAGGGATTGGTCGATGGAACCGTGTGTTCAGTGTGCTTGAATGAATTCCAGGAAGACGAAACCTTGAGACTCTTGCCAAAGTGCAGCCACGTGTTTCACATGCCCTGTATCGACACGTGGTTGCGGTCTCATATCAATTGCCCTCTTTGTCGTGCCGGTATTGTGCCCAGCAATGTCACTTCCGATGCAGCCATCTTAAATATGAGTTCAGCGGAGGAAAACTCGAACGCAGCGGGAAGAAATGGAGAAGCCCAGGTGGAGAGGGACGATGGTGAATTAGTCAGCGAGGTCTCGAGAAACCGGGAGGGAACAGAAGAAGCAGGGGAAGCCGCAGAGTTCATTCACGAACCAATTTCGAAGGAGCGTCCAAACATTGATGAGAATGAACAGGTTCTAGATGGAACTCGAAAGGGGACGAGTTCTGTTTCGATGGGTTCTTCGGTTGATCATGTAGACGATGAAACTGAACAATACACGATCAATCTCTTGGAGAAAGGCGGTGATGATTCAACACTCAATAAATCAGCACGCCGTTCCTCCATTGCACAACGTCTTCACGTAACCCCAATTTCGATGAAAAGGTCAGTCTCCTGCAGCGGGAAGATTGTATGTACGAGAACGAGGGGCTACCGGAGTCTTAATTCAAGTCTTCCCCGGTAG 1065 0.4817 MHRKLFPASTTTNQSQECSDFCDPTCPYNCYSYPDRYLPPPPILPPSNQISSYLAIVASLFTVIFVLVGFYVLKIKCYSDWCGRRRNGSLAMESDSLDDEFVRENQVDHPIWLITTIGLQQSIIKSITVCKYRKGEGLVDGTVCSVCLNEFQEDETLRLLPKCSHVFHMPCIDTWLRSHINCPLCRAGIVPSNVTSDAAILNMSSAEENSNAAGRNGEAQVERDDGELVSEVSRNREGTEEAGEAAEFIHEPISKERPNIDENEQVLDGTRKGTSSVSMGSSVDHVDDETEQYTINLLEKGGDDSTLNKSARRSSIAQRLHVTPISMKRSVSCSGKIVCTRTRGYRSLNSSLPR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0633 354 PANTHER RING-H2 FINGER PROTEIN ATL16 52 296 IPR044600 GO:0016567|GO:0016740
Prci15g0633 354 MobiDBLite consensus disorder prediction 207 262 - -
Prci15g0633 354 Pfam Ring finger domain 143 186 IPR001841 -
Prci15g0633 354 SUPERFAMILY RING/U-box 131 192 - -
Prci15g0633 354 FunFam RING-H2 finger protein ATL54 119 192 - -
Prci15g0633 354 CDD RING-H2_EL5-like 144 186 - -
Prci15g0633 354 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Prci15g0633 354 SMART ring_2 144 185 IPR001841 -
Prci15g0633 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 193 IPR013083 -
Prci15g0633 354 MobiDBLite consensus disorder prediction 218 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0633 Prci-Chr15 4097714 4099065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0633 2 196 C3H Transcription Factor Family AT1G72220 45.982 4.05e-62 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0633 - - pcin:129294734 680.248