Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0632 ATGGCGCTATTTCGTGGTCCCAGCTTCCCGTCAACGGCCAACCTCTCCGTAGAACACCAACTTCGCCCGCTCTACTCTCTCCACAATTCTCCCCATCCTTCCACCGGCAATCTCTCCTTTTATCCCTCGCCTTCCCCGTTTCATCTTCTACGCCTCTCCCTTGCATATCCCTCAAGCGCTAGATCCAAAAAAAATTCTCCTTTTCTGCCGATATCTGCCACTGCACCCCAGGAACTAGCGTTTACTTCCTCTCCTCCGGATGTTTCCGATGACAGCCAACCAACTGAGATACAAGCTGAAGAATTTTCTGGAACCAGGTTGCTTGCTCAGAACCTACCTTGGACTAGCACTCCTGAAGACGTTCGTTCTTTGTTTGAGAGGCATGGAAGAGTCCTGGACGTTGAGCTATCGATGTATAATAAGACTAGAAACAGGGGTTTGGCATTCGTTGAAATGGGCTCGGAAGAAGATGCTCTTGCGGCTCTGAAAAGTCTCGAATCGTATGAATATGAAGGGCGAATACTGAGACTTGCATATGCTAGGCCAAAAAAGCAGAAAGCTCCACCTCCTGTGCAGCAGAAGACAGTAACATTTAACATATTTGTTGCAAATTTGTCGTATGAGGCGAGGTCTAAAGATCTCAGGGAGTTTTTTGATTCAGGAAGTGGTACTGTTGTTTCTGCCGAGGTCATATTTCATGACAACCCTAGAAAGTCCGCTGGTTATGGATTTGTATCATTCAAGTCTAAAAAAGAAGCCGAGGCTGCCCTTTCTGATTTCCAAGGGAAGATTTTTATGGGAAGGCCAATCAGGGTGGCACGGAGTAAGCAGTTTGTTAAACAACCAATAGAGGAGAGTACAAGGGCTGGAGATACATCTTCTGAGACCAGCGTGGATGGGCTAGAAGCAGAAAAAGCTGATTGA 924 0.4686 MALFRGPSFPSTANLSVEHQLRPLYSLHNSPHPSTGNLSFYPSPSPFHLLRLSLAYPSSARSKKNSPFLPISATAPQELAFTSSPPDVSDDSQPTEIQAEEFSGTRLLAQNLPWTSTPEDVRSLFERHGRVLDVELSMYNKTRNRGLAFVEMGSEEDALAALKSLESYEYEGRILRLAYARPKKQKAPPPVQQKTVTFNIFVANLSYEARSKDLREFFDSGSGTVVSAEVIFHDNPRKSAGYGFVSFKSKKEAEAALSDFQGKIFMGRPIRVARSKQFVKQPIEESTRAGDTSSETSVDGLEAEKAD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0632 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 182 IPR000504 GO:0003723
Prci15g0632 307 Gene3D - 58 186 IPR012677 -
Prci15g0632 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 271 IPR000504 GO:0003723
Prci15g0632 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 175 IPR000504 GO:0003723
Prci15g0632 307 PANTHER OS02G0815200 PROTEIN 55 275 - -
Prci15g0632 307 MobiDBLite consensus disorder prediction 281 297 - -
Prci15g0632 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 277 IPR000504 GO:0003723
Prci15g0632 307 SMART rrm1_1 199 273 IPR000504 GO:0003723
Prci15g0632 307 SMART rrm1_1 106 178 IPR000504 GO:0003723
Prci15g0632 307 MobiDBLite consensus disorder prediction 281 307 - -
Prci15g0632 307 SUPERFAMILY RNA-binding domain, RBD 86 191 IPR035979 GO:0003676
Prci15g0632 307 SUPERFAMILY RNA-binding domain, RBD 189 281 IPR035979 GO:0003676
Prci15g0632 307 Gene3D - 187 291 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0632 Prci-Chr15 4089562 4092133 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0632 105 277 Eukaryotic Initiation Factors Gene Family AT3G16380 31.522 1.35e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0632 - - qsa:O6P43_015341 360.147
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0632 15 4089562 4092133 Prci15g0632 15 4089562 4092133 ECH