Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Prci15g0603 | ATGAAGCCCTCGGATACGATATGTAGCTCTCGTTACCTCCCTTCTTCACGTGACGATCCTACTGATTCCAATCTCTTGCCTGCCATGAACCGTAGCTTTCATCAGCTTCAGCCTCTTCCTCTACTGAGCAGCCTCCTCGGTTCAACTCCATTTAGCTCAAAACCTTACCCTACGACTGACCATGATGTTGGCGAGGAGGATGTCACAGTAGCCTTACACATAGGACTCCCCCACAATTCCAATGCTGCTTCTTCGGGTCCAAATGGAATCATCAGTGAAGCCCAGGCACCCAGGAACTACTGGATACCAACCCAAGAACAAATACTCATCGGATTCAGTCATTTCTCTTGTCCTGTCTGCCTCAAAACCTTCAACCGCTACAATAATCTCCAGATGCATATGTGGGGACATGGATCACAGTACAGAAGAGGGCCAGAGTCGCTGAAACGAACACATCCGAGGCCGTTGTTGGACGTTCCATGCTACTGTTGCGCAAGAGGATGCAGGAACAACATAGAGCACCCGAGGGCAAAGCCTCTGAAGGATTTTAGGACGCTGCAGACACACTTCAAGAGGAAGCACGGAAGCAAGCCCTTCATGTGTCGCAAGTGTGGGAAGCCTCTGGCTGTGAAAGGAGACTGGCGAACTCACGAGAAGAATTGTGGCAAGCGATGGCTTTGCGTCTGTGGCTCTGACTTTAAACACAAGAGGTCGCTTAAGGACCATATCAAAGCATTTGGCTCTGCTCATTACCCTCTCTCTTCTTCCTCCGATGCCATCTGA | 783 | 0.5006 | MKPSDTICSSRYLPSSRDDPTDSNLLPAMNRSFHQLQPLPLLSSLLGSTPFSSKPYPTTDHDVGEEDVTVALHIGLPHNSNAASSGPNGIISEAQAPRNYWIPTQEQILIGFSHFSCPVCLKTFNRYNNLQMHMWGHGSQYRRGPESLKRTHPRPLLDVPCYCCARGCRNNIEHPRAKPLKDFRTLQTHFKRKHGSKPFMCRKCGKPLAVKGDWRTHEKNCGKRWLCVCGSDFKHKRSLKDHIKAFGSAHYPLSSSSDAI | 260 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Prci15g0603 | 260 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
| Prci15g0603 | 260 | FunFam | zinc finger protein WIP2-like | 114 | 137 | - | - | |
| Prci15g0603 | 260 | Gene3D | Classic Zinc Finger | 114 | 137 | - | - | |
| Prci15g0603 | 260 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 115 | 142 | IPR013087 | - | |
| Prci15g0603 | 260 | Gene3D | Classic Zinc Finger | 177 | 251 | - | - | |
| Prci15g0603 | 260 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 117 | 137 | IPR013087 | - | |
| Prci15g0603 | 260 | FunFam | Zinc finger protein WIP2 | 168 | 250 | - | - | |
| Prci15g0603 | 260 | SUPERFAMILY | beta-beta-alpha zinc fingers | 110 | 137 | IPR036236 | - | |
| Prci15g0603 | 260 | SUPERFAMILY | beta-beta-alpha zinc fingers | 181 | 219 | IPR036236 | - | |
| Prci15g0603 | 260 | PANTHER | ZINC FINGER PROTEIN WIP2 | 31 | 253 | IPR043584 | GO:0003700|GO:0010468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Prci15g0603 | Prci-Chr15 | 3958695 | 3959829 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Prci15g0603 | 36 | 252 | C2H2 Transcription Factor Family | AT1G34790 | 59.336 | 2.17e-99 | 291 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Prci15g0603 | None | None | None |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Prci15g0603 | - | - | ccaj:109809318 | 383.645 |