Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0601 ATGGCTTACCCGCATTACCGATCACAGTTCGGCGACACAACATTCACCAAAGTGTTTGTCGGAGGACTCGCTTGGGAGACTCCCACTGAAGAAATGCGTAAATATTTCGAGCAGTTCGGAGACATTCTTGAGGCTGTCATAATCACCGATAAGAACACAGGAAAGTCTAAAGGCTACGGATTCGTAACATTCCGTGATCCGGAATCAGCTAGAAGGGCTTGTGCTGATCCAAACCCAATAATAGATGGAAGAAGAGCTAATTGCAATATTGCTTCTCTGGGAAGACCTCGACCTTCCCCACCCCGAGGAAGGAACGTATTCCAAGGCGGAAGCACATCACAGAGTGCAGCATCGTATGGTGGCGCCCCGGCAGCAGTTCCGCCGCCTCCTTTGCCGCCGCCTCCGCCTCCGCCGGGGCCTGGCCTCATGTACCCGCCGTATGGATACCCTCCCTACTCTCCTGATTACGGGTACCACCAAGCCGCATTGTACAACTCACAGATTCAGCAGCCACAATACTACCAGCAAGTGTATGGAGCTTCGTCGTCGGGCGTGAGCTCCCAGTATTACTATGGCTATTCTATGCAGCCGCCTAGGGCCTCATATTCTACGCCCCAGCCTCATCGCCTGCCACCTGGATCCTCCTATCTGTACTACCCTTACCCTTCACCCCCACCCCCACCTATGGATCTCTCCTTCTCCGCTTATCGTCCCCCTAGACAACCAACACTGTTAAGGCACCCCTTCCCCTCCCCTACTGATTCACAATCACAGACTCAACAGCGCCCCTCCTCCGAGACCGCAGCTGGAGTAGTTACGGCAGCCTCGGAAAGTCCGAATACCCAAGGGAAAAACTAA 858 0.5396 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACADPNPIIDGRRANCNIASLGRPRPSPPRGRNVFQGGSTSQSAASYGGAPAAVPPPPLPPPPPPPGPGLMYPPYGYPPYSPDYGYHQAALYNSQIQQPQYYQQVYGASSSGVSSQYYYGYSMQPPRASYSTPQPHRLPPGSSYLYYPYPSPPPPPMDLSFSAYRPPRQPTLLRHPFPSPTDSQSQTQQRPSSETAAGVVTAASESPNTQGKN 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0601 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Prci15g0601 285 MobiDBLite consensus disorder prediction 248 285 - -
Prci15g0601 285 SUPERFAMILY RNA-binding domain, RBD 9 115 IPR035979 GO:0003676
Prci15g0601 285 Gene3D - 3 111 IPR012677 -
Prci15g0601 285 MobiDBLite consensus disorder prediction 105 119 - -
Prci15g0601 285 SMART rrm1_1 17 89 IPR000504 GO:0003723
Prci15g0601 285 FunFam RNA-binding protein 24-B isoform X1 3 112 - -
Prci15g0601 285 CDD RRM_RBM24_RBM38_like 16 91 - -
Prci15g0601 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Prci15g0601 285 PANTHER BOULE-RELATED 6 267 - -
Prci15g0601 285 MobiDBLite consensus disorder prediction 91 139 - -
Prci15g0601 285 MobiDBLite consensus disorder prediction 229 285 - -
Prci15g0601 285 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0601 Prci-Chr15 3953570 3957840 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0601 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 3.66e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0601 K25006 - gmx:100788516 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci15g0601 15 3953570 3957840 Prci15g0601 15 3953570 3957840 ECH