Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0579 ATGGCAGCTAACATGGACGTCTGCAGCAACACAGAGATTCAGTCGGATCCCTTCAAAGGAGAGCTAATGGAAGCTCTCGTGCCTTTCATGAAAAGTGCATCCGCAACATCCTTGCCCTCTCCGCACACTGCTTCCAACATATTCCTAAATTCCCAACCTCCCTCTTCCAACTTGTTCCATTCCTCTCCTTCCATCCCTGAGCAGCCCAATTTGTATGCAGACGGTTGCTCGCCATCGATGACCCATGTATTTGCCGACGGGTTATTCAACAGCCAAAGCTTTATTGGCTTCGGGCAGCCGGCTCCTTTTCTTGGGCTCCACAACCAGACTCTGTCTCAGACTAACCAGATTCAACCTCAGATCCATGACCAGAACCCTCGAAACATGATCTGGCAGCAAAATACTCTCAGCATATTGAGCCCCAAACCTATTCCCATGAAGCAGGCGGGCGCGCCTTCTAAACCCACCAAGCTGTACAGAGGAGTCAGGCAGCGGCATTGGGGGAAATGGGTGGCCGAGATCCGACTACCGAAGAACCGTACCCGACTCTGGCTCGGCACCTTCGACACTGCCGAAGAAGCTGCCCTCGCCTACGACAGGGCCGCTTACAAGCTTAGAGGTGACTTTGCCAGGCTCAACTTCCCCAACCTCCGACACCAAGGTTCCTGCGTTGAGGGCGAATTCGGGGAGTACAAGCCTCTGCATTCCTCCGTGGATGCAAAGCTTCAAGCAATTTGCGAAAGCATGGCTGATATGCAGAAACAGGGGAAGTCGGAGAGACCGAAGAGGTCTTTGGGGCGGTCCCGAGTGGGTTCTACAGCTGCTCGGCCGCAGACAGTAATGCAGTCGGATGAGCAGCCGGTCGGCGGTGAAGCTGATTTTAAGGGTTCGGAGAACTCTTGCAACAAGTTGGAGACTTCCTCGTCTCCAGTGATAACTGAGAGTGGGGAATCTGGTGGTTCATCTCCTCTGTTAGATTTGACTTTCGGCGATGTCAGTGAGCCTCAGTGGGAAAGTATGGCAGACATTTTTAATCTGCAGAAGTACCCATCTGAGATCGACTGGGCATCCTTATGA 1077 0.5283 MAANMDVCSNTEIQSDPFKGELMEALVPFMKSASATSLPSPHTASNIFLNSQPPSSNLFHSSPSIPEQPNLYADGCSPSMTHVFADGLFNSQSFIGFGQPAPFLGLHNQTLSQTNQIQPQIHDQNPRNMIWQQNTLSILSPKPIPMKQAGAPSKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFDTAEEAALAYDRAAYKLRGDFARLNFPNLRHQGSCVEGEFGEYKPLHSSVDAKLQAICESMADMQKQGKSERPKRSLGRSRVGSTAARPQTVMQSDEQPVGGEADFKGSENSCNKLETSSSPVITESGESGGSSPLLDLTFGDVSEPQWESMADIFNLQKYPSEIDWASL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0579 358 ProSiteProfiles AP2/ERF domain profile. 158 215 IPR001471 GO:0003700|GO:0006355
Prci15g0579 358 SUPERFAMILY DNA-binding domain 158 216 IPR016177 GO:0003677
Prci15g0579 358 PRINTS Ethylene responsive element binding protein signature 181 197 IPR001471 GO:0003700|GO:0006355
Prci15g0579 358 PRINTS Ethylene responsive element binding protein signature 159 170 IPR001471 GO:0003700|GO:0006355
Prci15g0579 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 4 358 - -
Prci15g0579 358 FunFam Ethylene-responsive transcription factor 2 157 216 - -
Prci15g0579 358 CDD AP2 157 217 IPR001471 GO:0003700|GO:0006355
Prci15g0579 358 MobiDBLite consensus disorder prediction 299 322 - -
Prci15g0579 358 Gene3D AP2/ERF domain 158 216 IPR036955 GO:0003700|GO:0006355
Prci15g0579 358 Pfam AP2 domain 159 207 IPR001471 GO:0003700|GO:0006355
Prci15g0579 358 SMART rav1_2 158 221 IPR001471 GO:0003700|GO:0006355
Prci15g0579 358 MobiDBLite consensus disorder prediction 271 285 - -
Prci15g0579 358 MobiDBLite consensus disorder prediction 251 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0579 Prci-Chr15 3747656 3749558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0579 2 358 AP2-EREBP Transcription Factor Family AT1G78080 50.000 2.00e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci15g0579 AP2 4.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0579 K09286 - qsa:O6P43_015285 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0532 2 3871493 3873462 Prci15g0579 15 3747656 3749558 CCT
Prci15g0579 15 3747656 3749558 Prci15g0579 15 3747656 3749558 ECH