Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0537 ATGCGTCCTCCGAAGTCACGTCAAGTTCATCCCACCCCGGTTCAGGGTGGCCGTCTCGACCCTAAAATCTGGCGAGCATGCGCCGGTGGATCCTTTAGAATCCCTCCTCTTCATTCTAGGGTTTATTACTTCCCTCAGGGCCATATCGAGCATGCCTCGTCGGCTCCTCAATACCTTAACCCTCTAGTCTTCTACAGGCCCTTCATTCCCTGTCGTGTCTCCGCTGTTGAATTTCTTGCCGACCCTTCCACTGATGAGGTTTTTGCCAAGATTTCGCTCCTTCCTTTGAGTGATGGCAACTCTGATCACTATGCCGATTCCTTGGAAGCGCCGGACGATGACAAGATCGTGTCGTTTGCGAAGGTTCTGACGCCTTCTGACGCGAACAATGGCGGTGGATTCTCTGTTCCCAGGTACTGTGCTGACTCCATCTTTCCGCCCCTGAACTTCCAGGTCGATCGACCCACTCAGACATTGTACGTGACGGATGTTCACGGTAACGTCTGGGATTTTCGCCACATTTATCGGGGCACACCGAGGCGGCACTTGCTCACTACTGGCTGGAGTAAGTTTGTCAATAATAAGAAGCTGGTTGCTGGTGATTCGGTGGTTTTCATGAAAAATTCCAGGGGGACGATGTTCGTCGGGATTCGCAGAGCTTTGCGATTTGCTAAATTAACTACCGTCGATTGCTCCTCGTGGCCTTCCCAACTTGGTGGGGTGAGAAATAAGCCTGAGGGGGAGCAGCAGCAAGTGGGCTATCTAGGTTCCAAAGGGAAAGAAGGGTTTTCAAGGAACGGGAAGGGGAAATTGTCGGCCAAGGAAGTTGCTGATAATGCAGAATTGGCAGCACAAAACATGCCATTTGAAGTTGTGTATTATCCAAGGGTGGGCTGGTCGGACTTTGTGGTGAAGGCAGAAGTTGTGGAGAAAGCTTGGAATGTCGCGTGGACTTCCGGAATAAGAGTTAAAATGGCAATGGAGACAGAGGATTCGTCCAGGATCACATGGTTTCAGGGGACAGTATCTTCTGCATCTGCGCCTGATAATGGACTTTGGCGGGGTTCTCCATGGCGTATGCTTCAGGTTATGTGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCGAGTGAGCCCCTGGGAGGTTGAACTTGTTTCCTCTGCATTTCCCCCTAATGCAGTATTCCCTCCTGCAAAAAGGTTTAGAGCTGCTCAGTATTGCGGGGTGGCAACTGATAGAGAGGGAGACCCCTTCTTTATGACAGGTTTGACCAATTCAACAATGGGACACTTGAACCAATCATTGTTGAGTTACAATACTGTTCCTGCTGGCATGCAGGGAGCCAGGCAAGATCTATCTTCTGTATCAAGTCTCTCCAACTTTGAAATTGGTAATTCTCATCTGTATATTGGTAATACATTTGGGAATATGGTACCCAAGATGAAACCTTTTATGTCAACAGAGCCAAATATTGACAGTTCTCAGTCTTATAGCTTGTCACCAGAAAGCCAGAGTAGTTTGCATGGCTCTGGCACAGAATTTGCTGGGACCCGGAACTGCAATTTTGCAAAACAGGGTGCGAGTTCAATTCAGCTATTTGGTAAGCTCATTCAATTGGAACAGCCCGTTGAAAGTGGTTCTCATGCTTTTGGGTGCACGGTAGATGAGGGTAGTAATGGTTGCAATGAGACTGAAGGTGTTGACCAACCACTGGACCACTCTTTAACCAACAAATGCTCGCTTGGCTTGATGTCCAATACCAATGAGCATTCTAGGCAGTAG 1782 0.4865 MRPPKSRQVHPTPVQGGRLDPKIWRACAGGSFRIPPLHSRVYYFPQGHIEHASSAPQYLNPLVFYRPFIPCRVSAVEFLADPSTDEVFAKISLLPLSDGNSDHYADSLEAPDDDKIVSFAKVLTPSDANNGGGFSVPRYCADSIFPPLNFQVDRPTQTLYVTDVHGNVWDFRHIYRGTPRRHLLTTGWSKFVNNKKLVAGDSVVFMKNSRGTMFVGIRRALRFAKLTTVDCSSWPSQLGGVRNKPEGEQQQVGYLGSKGKEGFSRNGKGKLSAKEVADNAELAAQNMPFEVVYYPRVGWSDFVVKAEVVEKAWNVAWTSGIRVKMAMETEDSSRITWFQGTVSSASAPDNGLWRGSPWRMLQVMWDEPEVLQNAKRVSPWEVELVSSAFPPNAVFPPAKRFRAAQYCGVATDREGDPFFMTGLTNSTMGHLNQSLLSYNTVPAGMQGARQDLSSVSSLSNFEIGNSHLYIGNTFGNMVPKMKPFMSTEPNIDSSQSYSLSPESQSSLHGSGTEFAGTRNCNFAKQGASSIQLFGKLIQLEQPVESGSHAFGCTVDEGSNGCNETEGVDQPLDHSLTNKCSLGLMSNTNEHSRQ 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0537 593 Gene3D - 116 221 IPR015300 -
Prci15g0537 593 Pfam Auxin response factor 280 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci15g0537 593 Gene3D - 317 389 - -
Prci15g0537 593 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 545 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci15g0537 593 SMART B3_2 119 221 IPR003340 GO:0003677
Prci15g0537 593 ProSiteProfiles B3 DNA-binding domain profile. 119 221 IPR003340 GO:0003677
Prci15g0537 593 MobiDBLite consensus disorder prediction 486 512 - -
Prci15g0537 593 CDD B3_DNA 118 219 IPR003340 GO:0003677
Prci15g0537 593 MobiDBLite consensus disorder prediction 487 512 - -
Prci15g0537 593 FunFam Auxin response factor 117 221 - -
Prci15g0537 593 Pfam B3 DNA binding domain 119 220 IPR003340 GO:0003677
Prci15g0537 593 SUPERFAMILY DNA-binding pseudobarrel domain 106 226 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0537 Prci-Chr15 3515166 3519056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0537 18 565 B3 DNA Binding Superfamily AT1G77850 47.368 4.02e-170 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci15g0537 B3 1.7e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0537 - - qsa:O6P43_019702 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci2g0497 2 3633192 3638510 Prci15g0537 15 3515166 3519056 CCT
Prci15g0537 15 3515166 3519056 Prci15g0537 15 3515166 3519056 ECH