Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0471 ATGGCGGAGACAACTTCTCCCATGCTCATTGACGACAATAATGATAACTTCTCTGCCATACCCAACAAGGGCAAAAGCATGGTCGTTGCTGGCAACCCACCGGACGGCAGGGATACTCCGTGGGTTGAGAAGTACCGCCCCAAGTCCCTCGACGACGTCGCCGCACATCGCGACATTGTCGATACCATTGATAGGCTGACATCTGAGAACAGATTACCCCATCTTCTATTGTACGGCCCTCCAGGCACGGGCAAAACATCAACTATTCTCGCTGTGGCCCGCAAACTATATGGAACACAATACCAAAACATGATTTTGGAGCTCAATGCATCAGATGACAGGGGAATTGATATCGTACGCCAACAGATCCAAGATTTTGCTAGCACCCAGAGCTTCTCATTTGGAGTCAAGTCCTCTGTAAAGTTGGTCTTGTTAGATGAGGCTGATGCAATGACAAAGGATGCACAATTTGCACTGCGTAGAGTTATTGAGAAATATACAAAAAATACTAGGTTTGCACTTATCTGTAACCATGTAAACAAGATTATTCCAGCACTGCAATCAAGATGCACTAGATTTCGGTTTGCCCCTCTTGATACTGTCCATATTACTGAGAGATTGAAGCATATTATTAATGCTGAAGGGCTTGATGTTACAGAAAGCGGCTTAGCAGCACTTGTTCGACTTAGTAATGGAGATATGAGAAAGGCTTTGAACATTTTGCAGTCAACGCATATGGCTTCTCAGCAGATAACAGAAGAAGCTGTTTATCTTTGTACTGGAAACCCATTACCCAAAGACATCGAGCAAATATCTCACTGGCTTCTGAATGAACAATTTGCGGATAGTTTTAAAAGAATATATGAAATCAAAACAAGAAAAGGATTGGCTCTGGTCGATATTGTGAGAGAAGTCACAATGTTTGTTTTTAAGATTAGGATGCCTCCAAGTGTTCGAGTACAGTTGATGAATGATTTGGCTGACATAGAGTACAGATTGAGTTTTGGGTGCAACGACAAGCTGCAGCTGGGATCGGTTATTGCTTCTTTCACTCGGGCTAGATCTGCACTGGTTGCAGCTGCTAATTAA 1089 0.4334 MAETTSPMLIDDNNDNFSAIPNKGKSMVVAGNPPDGRDTPWVEKYRPKSLDDVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTQYQNMILELNASDDRGIDIVRQQIQDFASTQSFSFGVKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDTVHITERLKHIINAEGLDVTESGLAALVRLSNGDMRKALNILQSTHMASQQITEEAVYLCTGNPLPKDIEQISHWLLNEQFADSFKRIYEIKTRKGLALVDIVREVTMFVFKIRMPPSVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAAAN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0471 362 Gene3D - 201 262 - -
Prci15g0471 362 Gene3D - 35 197 IPR027417 -
Prci15g0471 362 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 256 IPR027417 -
Prci15g0471 362 FunFam Replication factor C subunit 5 263 360 - -
Prci15g0471 362 Pfam ATPase family associated with various cellular activities (AAA) 75 195 IPR003959 GO:0005524|GO:0016887
Prci15g0471 362 Gene3D - 263 361 - -
Prci15g0471 362 CDD AAA 59 197 - -
Prci15g0471 362 CDD HLD_clamp_RFC 198 260 - -
Prci15g0471 362 FunFam Replication factor C subunit 5 34 198 - -
Prci15g0471 362 Pfam Replication factor C C-terminal domain 263 349 IPR013748 -
Prci15g0471 362 SMART AAA_5 71 201 IPR003593 GO:0016887
Prci15g0471 362 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 40 344 - -
Prci15g0471 362 FunFam Replication factor C subunit 5 200 262 - -
Prci15g0471 362 SUPERFAMILY post-AAA+ oligomerization domain-like 263 353 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0471 Prci-Chr15 2977347 2984185 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0471 1 361 Core DNA Replication Machinery Family AT1G77470 77.778 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0471 K10756 - gmx:100782652 631.328