Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0469 ATGGAACCAGAAGAGGGCAAACAATCTTCCCACAAAACCCCATACACTGAACTCGAGCAAGTTAACTCTGATTTCACCCTGGCAATCGCTTTGCAAGAGCAAGAGGGAACCTTCACAAGGTTTGCCACCATGGACAGTGAAGAAAGCGGCAATGAAGATGAAAGTGAGTCATCTTTTGAAGATGAAGATGATGATGAATATGCTGACTTTTCTGAGAGCCAAGAATTCGAATTAGGAGACCTTCAGTTTCTTGAGGGTGAAGGAAGCAACGACGAAGAGATGGAAGAAGATGAGATAGATCCGGATGAACTATCCTACGAGGAGCTGATTGAATTGGGGGAATTTATAGGAGAGGAGAGGAGAGGATTGTCAGCAAATGAAATCCCTTGCTGCTTGCATCCGTACACTTGCCATTTTGCTGAAAACAAGACTGGAATAGATCGTTGTGTGATATGTCAGGTTGAATATGAGGAAGGCCAAGCACTAATGGCACTTCAATGTGAGCACCCTTATCATTCAGAATGCATAACCAAGTGGCTTCAGATTAAGAAGGTTTGTCCAATTTGTAGCACTGAGGTTCTCCACTTCAAAGCTGACTAA 600 0.435 MEPEEGKQSSHKTPYTELEQVNSDFTLAIALQEQEGTFTRFATMDSEESGNEDESESSFEDEDDDEYADFSESQEFELGDLQFLEGEGSNDEEMEEDEIDPDELSYEELIELGEFIGEERRGLSANEIPCCLHPYTCHFAENKTGIDRCVICQVEYEEGQALMALQCEHPYHSECITKWLQIKKVCPICSTEVLHFKAD 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0469 199 SMART ring_2 149 189 IPR001841 -
Prci15g0469 199 SUPERFAMILY RING/U-box 148 195 - -
Prci15g0469 199 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 198 IPR013083 -
Prci15g0469 199 ProSiteProfiles Zinc finger RING-type profile. 149 190 IPR001841 -
Prci15g0469 199 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 4 85 IPR043312 -
Prci15g0469 199 FunFam E3 ubiquitin ligase BIG BROTHER-related 115 195 - -
Prci15g0469 199 MobiDBLite consensus disorder prediction 38 79 - -
Prci15g0469 199 Pfam Ring finger domain 148 189 IPR001841 -
Prci15g0469 199 MobiDBLite consensus disorder prediction 48 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0469 Prci-Chr15 2966845 2968315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0469 96 194 C3H Transcription Factor Family AT3G63530 50.980 2.52e-31 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0469 K19045 - gmx:100526881 227.639