Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci15g0443 ATGCTACGGACGAATGCATTTGAAGGAGCGAATGTGTTCATGTCACGGAACCTCGTGCCGCCGGAAGTCTTCGACACACTCCACGACGCGCTTAAGAATAATGGCGCACGCGTCCATCTTTGCTGCGACCCTTCGCGCAATGGGCCACACGACTATCACATCATATCTCACGATCACGAGAAACTTGAGGATCTTAAAGCCAGGGGTTGTAATCTGCTTGGTCCTCAGTGTGTGCTTTCATGTGCAAAAGAACAGAGACCTCTGCCTAAACAGGGTTTCACTTGTTGCCTTGCCATGGACGGTGTCAAAGTACTTGCATCTGGTTTTGATATGGATGAGAAGATGAAGATAGGAGAGTTAGTAAATTCAATGGGGGGAATTCTGCACATTAAGGCATCACTGGATGTAAACTTTGTGATTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATATGCTGAAGAAACCAATAGTCACTTTTAATTGGTTAAAGCAATGCTCCATTGAGCATCGCATTGTTCCCCAAGAGTCATACAGGATTCTTCCCTTTTCTGGGTTGACAATTTGTGTTACCCGAATTCCAGCAGATGAGCGCAGAAAAATTGAGATGCTTATTGTACAGAATGGTGGGAAATACTCTGCGGAGCTAACGAAGAAGTGCACACATTTGATTTCTGATGCTCCTGAAGGTGACAAATATAAGGTGGCAAAACGATGGGGTCACATTCATATTGTGACAAAGAAATGGTTTGATCAGTCTATTGTCAGAAGAGCATGTCTGAATGAGGAGTCTTACCCCGTTCAGCAAGGACCTGTATCTTCACAAAGAATGTTTATGGATAATTTAACAGCACAACATAGCCAAGAAAAAGAAAACGGGAAATTGCAATCTGCTGCATCATCTGGACTTCCAGATTCATGTATGCCTGTTGTTTCCTTTGCTGAGCTTGCGGACAGAGATCCAGATGCTACACAGTCAGAGAACACTTCTATTGCCGTTTCAGATGTTCCTATCTTTGTTAATGGGACAGATCCTCAAGCACCTCCAGTGCAACCCAATAATGACCCAAACCTTGACAGTGCTGTAGCCAGGGATTCTGAATCTGATGATAATGATCTGTACTTATCAGAATGCAGGATATCACTTGTTGGCTTTGAAGCTTCTGAAATGCGTAAACTAGTTAATATGGTTCGTAAAGGAGGAGGATCCAGATATATGTCTCTTAATGACAAGTTGACACACATAGTGATCGGAACCCCTTCAGAAATAGAAAAGAAGGATGTAAGGAGTCTTGCTGCTTTGGGTATCATCTACGTTGTTAAAACTACATGGCTTGAAGATTGTGACCATGAAAAGAAAGAAGTCCCTGTTCTAAAGAGACACATTGCCCAAGATCTTCTTCTTCCTAAAGGTTCAGCATCTTTTGTGAAAGGAGCTGTAACTGGAATTATGGGCATGAATAAAGGTAAAGGCCCCAGCACTCATCAAAGCTTGCAGGCTGATCAGTTGATAACTAGTATGGACTCTAGAGTTGTGATGCCATTATCTGTGGAGAAAAAAGAAGAAAAGAAGCTGGAGATGAATGTGACTGATCAAACTTTTCTTAAATCAATGGACAAGTCAACTCAGAAAACGCAACTTCCTGTTGCTAATAATAAAATGAAGGGTCAAAAGAAGATGCTTAATGACTCTTCTCAGTGTGTGAAGCCATCAACAGTTTTCTGCGGGAGGATGTTTTGTTTTTCAAATTCTTTCCCTGAAGAGAGAAGAGATGAGGTTGTTCAATGGATAAGTCAGGGGGGAGGTGAGTTAGTAGATGGTCACGCAAAACAGAATGCCCATTATACTATTGAGTGTCATGGTGTAACAAGTAGGTTGGAAGATATTTCCCAAACAACGTGCATTTCCAGTCATTGGATACGATCTTGTTTAGAGAATGACTGCTTGCTGGATGTTGATAGTCACATTCTTTATTCTCCACTCCCTTGTTGTATACCCTTGCCTGGGTTTGAAAGCTTTCGGTTTTGTGTTTCTCAATATGAGGGGAAAGACAGAATGCTGCTGAGGAACTTGTGCTTTGTTCTTGGAGCTACATTTGTGGAGAAGTTGACAAAGAAAGTCACACATTTATTATGCAAATTCATCAATGGGCCCAAGTATGAGGCAGCTTGTAAGTGGGGGATCCAGGTGGTTACCGCTGAATGGATATTTGAATGTGTCAAACAGAATAAAGTTGTTGTTGTTGACCAATTTTTACCCAAAGAAGTCACTGTTCAAGATCAAGAGAACCAAGAGGCAGGAGTGTTTACTGTGAGTCAATTTCCTAACCCGGCTGATAGCATTAGAGGAGACAGCTCTGCCCAATTTGCGAGTCGATTGATAAATTTGAGAAACATCTCAAGTCAAAGTGTGGGTAGTCAAGTCAACAATTATGGGGTTGATGCTAAAATATCAAGTGTTTGTTGCAAAAAGGCAAGGCTTTTGGAAGAGTCTGGCCTGTATGTTACAGTGCCTTCTCCTGTAGCTTCAGCTACTCCTATCTACGATATGAGTTCTACTGGAAACAACATGCTAATAGATACTACTAGTGAGGTTTCTCCAGCTGCTCCTGATGTCGCTGCTGCAATTGAGGACTTGTTAGAGCAGACTAGTAAGATGCACGATCAGACATCTCCGAGGAAGACCGTGAATAAGTGTAACAATTTTTCATCTGATTGTTCTGTTCTGGATGAAAATCAATCAAATCCTCATACTGTCACTGGATTTTCTGAACACTGGTTGAACAGAAGTAGAAGAAACGAGGATAATGATGTTGCTTCTCGAGATGGAAGAGCAGCTTATGATAATTTTAGTGAAACACAAACTGAATCTCAGGTTGTTGGTTATGAAGAAGATTTGTCTGGAAGACAAATGCTTATCGACAGAGTCCGAACACGTAGTAGTATGGCTTGA 2961 0.4164 MLRTNAFEGANVFMSRNLVPPEVFDTLHDALKNNGARVHLCCDPSRNGPHDYHIISHDHEKLEDLKARGCNLLGPQCVLSCAKEQRPLPKQGFTCCLAMDGVKVLASGFDMDEKMKIGELVNSMGGILHIKASLDVNFVIVKNVLAAKYKWALNMLKKPIVTFNWLKQCSIEHRIVPQESYRILPFSGLTICVTRIPADERRKIEMLIVQNGGKYSAELTKKCTHLISDAPEGDKYKVAKRWGHIHIVTKKWFDQSIVRRACLNEESYPVQQGPVSSQRMFMDNLTAQHSQEKENGKLQSAASSGLPDSCMPVVSFAELADRDPDATQSENTSIAVSDVPIFVNGTDPQAPPVQPNNDPNLDSAVARDSESDDNDLYLSECRISLVGFEASEMRKLVNMVRKGGGSRYMSLNDKLTHIVIGTPSEIEKKDVRSLAALGIIYVVKTTWLEDCDHEKKEVPVLKRHIAQDLLLPKGSASFVKGAVTGIMGMNKGKGPSTHQSLQADQLITSMDSRVVMPLSVEKKEEKKLEMNVTDQTFLKSMDKSTQKTQLPVANNKMKGQKKMLNDSSQCVKPSTVFCGRMFCFSNSFPEERRDEVVQWISQGGGELVDGHAKQNAHYTIECHGVTSRLEDISQTTCISSHWIRSCLENDCLLDVDSHILYSPLPCCIPLPGFESFRFCVSQYEGKDRMLLRNLCFVLGATFVEKLTKKVTHLLCKFINGPKYEAACKWGIQVVTAEWIFECVKQNKVVVVDQFLPKEVTVQDQENQEAGVFTVSQFPNPADSIRGDSSAQFASRLINLRNISSQSVGSQVNNYGVDAKISSVCCKKARLLEESGLYVTVPSPVASATPIYDMSSTGNNMLIDTTSEVSPAAPDVAAAIEDLLEQTSKMHDQTSPRKTVNKCNNFSSDCSVLDENQSNPHTVTGFSEHWLNRSRRNEDNDVASRDGRAAYDNFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSMA 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci15g0443 986 Pfam BRCT domain, a BRCA1 C-terminus domain 574 657 IPR001357 -
Prci15g0443 986 Pfam BRCA1 C Terminus (BRCT) domain 375 451 IPR001357 -
Prci15g0443 986 ProSiteProfiles BRCT domain profile. 99 183 IPR001357 -
Prci15g0443 986 FunFam DNA topoisomerase II binding protein 1 186 278 - -
Prci15g0443 986 CDD BRCT 102 169 - -
Prci15g0443 986 FunFam Transcription coactivator 96 184 - -
Prci15g0443 986 Gene3D BRCT domain 45 93 IPR036420 -
Prci15g0443 986 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 8 984 - -
Prci15g0443 986 SUPERFAMILY BRCT domain 573 662 IPR036420 -
Prci15g0443 986 SUPERFAMILY BRCT domain 371 459 IPR036420 -
Prci15g0443 986 CDD BRCT_TopBP1_rpt2_like 185 257 - -
Prci15g0443 986 SUPERFAMILY BRCT domain 58 183 IPR036420 -
Prci15g0443 986 SMART BRCT_7 574 650 IPR001357 -
Prci15g0443 986 SMART BRCT_7 670 746 IPR001357 -
Prci15g0443 986 SMART BRCT_7 183 260 IPR001357 -
Prci15g0443 986 SMART BRCT_7 4 85 IPR001357 -
Prci15g0443 986 SMART BRCT_7 96 173 IPR001357 -
Prci15g0443 986 SMART BRCT_7 375 455 IPR001357 -
Prci15g0443 986 MobiDBLite consensus disorder prediction 344 371 - -
Prci15g0443 986 ProSiteProfiles BRCT domain profile. 186 270 IPR001357 -
Prci15g0443 986 Gene3D BRCT domain 97 184 IPR036420 -
Prci15g0443 986 ProSiteProfiles BRCT domain profile. 373 465 IPR001357 -
Prci15g0443 986 ProSiteProfiles BRCT domain profile. 572 660 IPR001357 -
Prci15g0443 986 Gene3D BRCT domain 360 463 IPR036420 -
Prci15g0443 986 FunFam Transcription coactivator 355 465 - -
Prci15g0443 986 Gene3D BRCT domain 185 272 IPR036420 -
Prci15g0443 986 FunFam Transcription coactivator 569 666 - -
Prci15g0443 986 Pfam twin BRCT domain 677 738 IPR001357 -
Prci15g0443 986 Pfam twin BRCT domain 189 252 IPR001357 -
Prci15g0443 986 SUPERFAMILY BRCT domain 637 757 IPR036420 -
Prci15g0443 986 SUPERFAMILY BRCT domain 185 270 IPR036420 -
Prci15g0443 986 Gene3D BRCT domain 570 666 IPR036420 -
Prci15g0443 986 CDD BRCT_TopBP1_rpt2_like 671 746 - -
Prci15g0443 986 ProSiteProfiles BRCT domain profile. 673 756 IPR001357 -
Prci15g0443 986 Gene3D BRCT domain 668 760 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci15g0443 Prci-Chr15 2831311 2846444 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci15g0443 1 986 Core DNA Replication Machinery Family AT1G77320 50.973 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci15g0443 K10728 - qsa:O6P43_015132 1271.14